Experiment: Bas58
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yfgH and yfgG are separated by 313 nucleotides yfgG and OKFHMN_21785 are separated by 35 nucleotides OKFHMN_21785 and pdeF are separated by 181 nucleotides
OKFHMN_21775: yfgH - Uncharacterized lipoprotein YfgH, at 4,228,127 to 4,228,642
yfgH
OKFHMN_21780: yfgG - Uncharacterized protein YfgG, at 4,228,956 to 4,229,129
yfgG
OKFHMN_21785: OKFHMN_21785 - hypothetical protein, at 4,229,165 to 4,229,317
_21785
OKFHMN_21790: pdeF - cyclic-guanylate-specific phosphodiesterase PdeF, at 4,229,499 to 4,231,742
pdeF
Position (kb) 4229
4230 Strain fitness (log2 ratio) -2
-1
0
1 at 4228.177 kb on - strand at 4228.177 kb on - strand at 4228.200 kb on - strand, within yfgH at 4228.211 kb on - strand, within yfgH at 4228.264 kb on + strand, within yfgH at 4228.267 kb on - strand, within yfgH at 4228.309 kb on + strand, within yfgH at 4228.309 kb on + strand, within yfgH at 4228.310 kb on - strand, within yfgH at 4228.329 kb on - strand, within yfgH at 4228.790 kb on + strand at 4229.049 kb on - strand, within yfgG at 4229.049 kb on - strand, within yfgG at 4229.070 kb on - strand, within yfgG at 4229.109 kb on - strand, within yfgG at 4229.189 kb on + strand, within OKFHMN_21785 at 4229.189 kb on + strand, within OKFHMN_21785 at 4229.190 kb on - strand, within OKFHMN_21785 at 4229.301 kb on + strand, within OKFHMN_21785 at 4229.329 kb on + strand at 4229.534 kb on + strand at 4229.595 kb on - strand at 4229.637 kb on + strand at 4229.817 kb on - strand, within pdeF at 4229.870 kb on + strand, within pdeF at 4229.871 kb on - strand, within pdeF at 4229.941 kb on + strand, within pdeF at 4230.065 kb on - strand, within pdeF at 4230.167 kb on - strand, within pdeF at 4230.234 kb on - strand, within pdeF at 4230.244 kb on + strand, within pdeF at 4230.287 kb on + strand, within pdeF
Per-strain Table
Position Strand Gene LocusTag Fraction Bas58 remove 4,228,177 - -0.4 4,228,177 - +0.0 4,228,200 - yfgH OKFHMN_21775 0.14 +0.5 4,228,211 - yfgH OKFHMN_21775 0.16 +0.1 4,228,264 + yfgH OKFHMN_21775 0.27 -0.4 4,228,267 - yfgH OKFHMN_21775 0.27 +0.2 4,228,309 + yfgH OKFHMN_21775 0.35 +0.2 4,228,309 + yfgH OKFHMN_21775 0.35 -0.3 4,228,310 - yfgH OKFHMN_21775 0.35 +0.5 4,228,329 - yfgH OKFHMN_21775 0.39 -0.7 4,228,790 + +1.4 4,229,049 - yfgG OKFHMN_21780 0.53 +0.6 4,229,049 - yfgG OKFHMN_21780 0.53 +0.2 4,229,070 - yfgG OKFHMN_21780 0.66 -1.8 4,229,109 - yfgG OKFHMN_21780 0.88 +1.0 4,229,189 + OKFHMN_21785 0.16 +0.5 4,229,189 + OKFHMN_21785 0.16 +0.7 4,229,190 - OKFHMN_21785 0.16 -0.3 4,229,301 + OKFHMN_21785 0.89 +0.4 4,229,329 + +0.0 4,229,534 + -0.1 4,229,595 - +1.4 4,229,637 + -0.1 4,229,817 - pdeF OKFHMN_21790 0.14 -0.1 4,229,870 + pdeF OKFHMN_21790 0.17 -1.1 4,229,871 - pdeF OKFHMN_21790 0.17 +1.4 4,229,941 + pdeF OKFHMN_21790 0.20 -0.0 4,230,065 - pdeF OKFHMN_21790 0.25 -1.5 4,230,167 - pdeF OKFHMN_21790 0.30 +1.4 4,230,234 - pdeF OKFHMN_21790 0.33 -0.0 4,230,244 + pdeF OKFHMN_21790 0.33 -1.1 4,230,287 + pdeF OKFHMN_21790 0.35 -0.2
Or see this region's nucleotide sequence