Strain Fitness in Escherichia coli ECRC100 around OKFHMN_21315

Experiment: Bas58

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntpssA and pssL overlap by 17 nucleotidespssL and pat are separated by 88 nucleotides OKFHMN_21310: pssA - CDP-diacylglycerol--serine O-phosphatidyltransferase, at 4,130,300 to 4,131,655 pssA OKFHMN_21315: pssL - Protein PssL, at 4,131,639 to 4,131,680 pssL OKFHMN_21320: pat - protein lysine acetyltransferase, at 4,131,769 to 4,134,429 pat Position (kb) 4131 4132Strain fitness (log2 ratio) -2 -1 0 1at 4131.712 kb on - strandat 4131.712 kb on - strandat 4131.712 kb on - strandat 4131.892 kb on - strandat 4131.892 kb on - strandat 4131.892 kb on - strandat 4131.930 kb on - strandat 4131.950 kb on - strandat 4131.967 kb on + strandat 4131.967 kb on + strandat 4131.967 kb on + strandat 4132.161 kb on + strand, within patat 4132.375 kb on - strand, within patat 4132.539 kb on + strand, within pat

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas58
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4,131,712 - -0.7
4,131,712 - +1.1
4,131,712 - -0.1
4,131,892 - -0.6
4,131,892 - -0.5
4,131,892 - -0.5
4,131,930 - -0.1
4,131,950 - -0.3
4,131,967 + +0.8
4,131,967 + +0.4
4,131,967 + -0.5
4,132,161 + pat OKFHMN_21320 0.15 -2.1
4,132,375 - pat OKFHMN_21320 0.23 -2.2
4,132,539 + pat OKFHMN_21320 0.29 +0.3

Or see this region's nucleotide sequence