Strain Fitness in Escherichia coli ECRC100 around OKFHMN_21030

Experiment: Bas58

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOKFHMN_21025 and OKFHMN_21030 are separated by 90 nucleotidesOKFHMN_21030 and OKFHMN_21045 are separated by 240 nucleotides OKFHMN_21025: OKFHMN_21025 - Membrane protein, at 4,087,070 to 4,087,813 _21025 OKFHMN_21030: OKFHMN_21030 - hypothetical protein, at 4,087,904 to 4,088,233 _21030 OKFHMN_21045: OKFHMN_21045 - DUF1737 domain-containing protein, at 4,088,474 to 4,090,327 _21045 Position (kb) 4087 4088 4089Strain fitness (log2 ratio) -2 -1 0 1at 4086.913 kb on - strandat 4086.951 kb on - strandat 4086.979 kb on + strandat 4087.003 kb on - strandat 4087.003 kb on - strandat 4087.003 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas58
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4,086,913 - -0.5
4,086,951 - +1.1
4,086,979 + -0.4
4,087,003 - -1.9
4,087,003 - +0.3
4,087,003 - +1.1

Or see this region's nucleotide sequence