Experiment: Bas58
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt gshA and luxS are separated by 149 nucleotides luxS and emrB are separated by 63 nucleotides
OKFHMN_20760: gshA - glutamate--cysteine ligase, at 4,036,002 to 4,037,558
gshA
OKFHMN_20770: luxS - S-ribosylhomocysteine lyase, at 4,037,708 to 4,038,223
luxS
OKFHMN_20775: emrB - multidrug efflux MFS transporter permease subunit EmrB, at 4,038,287 to 4,039,825
emrB
Position (kb) 4037
4038
4039 Strain fitness (log2 ratio) -1
0
1
2
3 at 4036.722 kb on + strand, within gshA at 4036.755 kb on - strand, within gshA at 4036.900 kb on - strand, within gshA at 4037.026 kb on + strand, within gshA at 4037.027 kb on - strand, within gshA at 4037.357 kb on - strand, within gshA at 4037.363 kb on + strand, within gshA at 4037.417 kb on + strand at 4037.467 kb on + strand at 4037.718 kb on + strand at 4037.719 kb on - strand at 4037.719 kb on - strand at 4037.719 kb on - strand at 4037.896 kb on + strand, within luxS at 4037.896 kb on + strand, within luxS at 4037.912 kb on - strand, within luxS at 4037.969 kb on + strand, within luxS at 4037.971 kb on + strand, within luxS at 4038.099 kb on - strand, within luxS at 4038.233 kb on + strand at 4038.246 kb on - strand at 4038.278 kb on + strand at 4038.279 kb on - strand at 4038.279 kb on - strand at 4038.285 kb on - strand at 4038.285 kb on - strand at 4038.486 kb on + strand, within emrB at 4038.487 kb on - strand, within emrB at 4038.767 kb on - strand, within emrB at 4038.768 kb on + strand, within emrB at 4038.769 kb on - strand, within emrB at 4038.795 kb on + strand, within emrB at 4038.796 kb on - strand, within emrB at 4038.796 kb on - strand, within emrB at 4038.799 kb on + strand, within emrB at 4038.800 kb on - strand, within emrB at 4038.800 kb on - strand, within emrB at 4038.800 kb on - strand, within emrB at 4038.881 kb on - strand, within emrB at 4038.976 kb on - strand, within emrB at 4038.983 kb on - strand, within emrB at 4038.984 kb on + strand, within emrB at 4038.985 kb on - strand, within emrB at 4038.985 kb on - strand, within emrB at 4038.998 kb on - strand, within emrB at 4039.094 kb on - strand, within emrB
Per-strain Table
Position Strand Gene LocusTag Fraction Bas58 remove 4,036,722 + gshA OKFHMN_20760 0.46 -1.2 4,036,755 - gshA OKFHMN_20760 0.48 +0.3 4,036,900 - gshA OKFHMN_20760 0.58 -0.5 4,037,026 + gshA OKFHMN_20760 0.66 +0.7 4,037,027 - gshA OKFHMN_20760 0.66 +0.6 4,037,357 - gshA OKFHMN_20760 0.87 -0.5 4,037,363 + gshA OKFHMN_20760 0.87 +0.5 4,037,417 + +0.2 4,037,467 + +3.5 4,037,718 + -0.3 4,037,719 - +0.2 4,037,719 - -0.3 4,037,719 - -0.2 4,037,896 + luxS OKFHMN_20770 0.36 -0.6 4,037,896 + luxS OKFHMN_20770 0.36 +0.3 4,037,912 - luxS OKFHMN_20770 0.40 -0.5 4,037,969 + luxS OKFHMN_20770 0.51 -0.1 4,037,971 + luxS OKFHMN_20770 0.51 +0.3 4,038,099 - luxS OKFHMN_20770 0.76 +1.5 4,038,233 + +0.2 4,038,246 - +0.5 4,038,278 + -0.1 4,038,279 - -0.6 4,038,279 - -0.5 4,038,285 - +0.4 4,038,285 - -0.5 4,038,486 + emrB OKFHMN_20775 0.13 -0.8 4,038,487 - emrB OKFHMN_20775 0.13 +0.1 4,038,767 - emrB OKFHMN_20775 0.31 -0.7 4,038,768 + emrB OKFHMN_20775 0.31 -1.1 4,038,769 - emrB OKFHMN_20775 0.31 -1.0 4,038,795 + emrB OKFHMN_20775 0.33 +0.4 4,038,796 - emrB OKFHMN_20775 0.33 +0.1 4,038,796 - emrB OKFHMN_20775 0.33 +0.5 4,038,799 + emrB OKFHMN_20775 0.33 +0.5 4,038,800 - emrB OKFHMN_20775 0.33 -0.6 4,038,800 - emrB OKFHMN_20775 0.33 -0.5 4,038,800 - emrB OKFHMN_20775 0.33 -0.4 4,038,881 - emrB OKFHMN_20775 0.39 -0.6 4,038,976 - emrB OKFHMN_20775 0.45 +2.5 4,038,983 - emrB OKFHMN_20775 0.45 +0.1 4,038,984 + emrB OKFHMN_20775 0.45 +0.5 4,038,985 - emrB OKFHMN_20775 0.45 +0.6 4,038,985 - emrB OKFHMN_20775 0.45 -0.7 4,038,998 - emrB OKFHMN_20775 0.46 -1.5 4,039,094 - emrB OKFHMN_20775 0.52 -1.1
Or see this region's nucleotide sequence