Experiment: Bas58
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt hycC and hycD are separated by 2 nucleotides hycD and hycE are separated by 17 nucleotides hycE and hycF are separated by 9 nucleotides hycF and hycG overlap by 1 nucleotides
OKFHMN_20580: hycC - formate hydrogenlyase subunit 3, at 4,003,465 to 4,005,291
hycC
OKFHMN_20585: hycD - formate hydrogenlyase subunit HycD, at 4,005,294 to 4,006,217
hycD
OKFHMN_20590: hycE - formate hydrogenlyase subunit HycE, at 4,006,235 to 4,007,944
hycE
OKFHMN_20595: hycF - formate hydrogenlyase subunit HycF, at 4,007,954 to 4,008,496
hycF
OKFHMN_20600: hycG - formate hydrogenlyase subunit HycG, at 4,008,496 to 4,009,263
hycG
Position (kb) 4006
4007
4008 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4005.270 kb on + strand at 4005.305 kb on - strand at 4005.331 kb on + strand at 4005.593 kb on - strand, within hycD at 4005.593 kb on - strand, within hycD at 4005.787 kb on - strand, within hycD at 4006.148 kb on + strand at 4006.148 kb on + strand at 4006.149 kb on - strand at 4006.149 kb on - strand at 4006.161 kb on - strand at 4006.161 kb on - strand at 4006.219 kb on + strand at 4006.262 kb on + strand at 4006.262 kb on + strand at 4006.263 kb on - strand at 4006.263 kb on - strand at 4006.382 kb on + strand at 4006.383 kb on - strand at 4006.386 kb on - strand at 4006.386 kb on - strand at 4006.449 kb on - strand, within hycE at 4006.457 kb on + strand, within hycE at 4006.460 kb on + strand, within hycE at 4006.487 kb on - strand, within hycE at 4006.594 kb on + strand, within hycE at 4006.595 kb on - strand, within hycE at 4006.595 kb on - strand, within hycE at 4006.670 kb on + strand, within hycE at 4006.877 kb on + strand, within hycE at 4006.877 kb on + strand, within hycE at 4006.877 kb on + strand, within hycE at 4006.878 kb on - strand, within hycE at 4006.922 kb on + strand, within hycE at 4006.924 kb on + strand, within hycE at 4007.018 kb on - strand, within hycE at 4007.201 kb on - strand, within hycE at 4007.515 kb on + strand, within hycE at 4007.536 kb on + strand, within hycE at 4007.537 kb on - strand, within hycE at 4007.549 kb on + strand, within hycE at 4007.550 kb on - strand, within hycE at 4007.620 kb on + strand, within hycE at 4007.625 kb on - strand, within hycE at 4007.715 kb on - strand, within hycE at 4007.715 kb on - strand, within hycE at 4007.766 kb on - strand, within hycE at 4007.866 kb on + strand at 4007.942 kb on + strand at 4007.960 kb on - strand at 4008.364 kb on + strand, within hycF at 4008.478 kb on + strand at 4008.507 kb on - strand at 4008.741 kb on - strand, within hycG at 4008.830 kb on - strand, within hycG at 4008.830 kb on - strand, within hycG at 4008.916 kb on + strand, within hycG at 4008.916 kb on + strand, within hycG at 4008.917 kb on - strand, within hycG at 4008.917 kb on - strand, within hycG
Per-strain Table
Position Strand Gene LocusTag Fraction Bas58 remove 4,005,270 + -0.1 4,005,305 - +0.2 4,005,331 + +0.5 4,005,593 - hycD OKFHMN_20585 0.32 -1.3 4,005,593 - hycD OKFHMN_20585 0.32 +0.3 4,005,787 - hycD OKFHMN_20585 0.53 +0.5 4,006,148 + -0.4 4,006,148 + +0.4 4,006,149 - -0.8 4,006,149 - -0.1 4,006,161 - +0.0 4,006,161 - +1.1 4,006,219 + -0.4 4,006,262 + -0.3 4,006,262 + -0.7 4,006,263 - +0.6 4,006,263 - +0.7 4,006,382 + -0.0 4,006,383 - +0.0 4,006,386 - +0.2 4,006,386 - +0.1 4,006,449 - hycE OKFHMN_20590 0.13 -0.0 4,006,457 + hycE OKFHMN_20590 0.13 -0.1 4,006,460 + hycE OKFHMN_20590 0.13 -1.0 4,006,487 - hycE OKFHMN_20590 0.15 +0.9 4,006,594 + hycE OKFHMN_20590 0.21 -0.4 4,006,595 - hycE OKFHMN_20590 0.21 -0.1 4,006,595 - hycE OKFHMN_20590 0.21 -0.8 4,006,670 + hycE OKFHMN_20590 0.25 +0.2 4,006,877 + hycE OKFHMN_20590 0.38 +0.9 4,006,877 + hycE OKFHMN_20590 0.38 -2.3 4,006,877 + hycE OKFHMN_20590 0.38 +0.7 4,006,878 - hycE OKFHMN_20590 0.38 -0.2 4,006,922 + hycE OKFHMN_20590 0.40 +0.7 4,006,924 + hycE OKFHMN_20590 0.40 +0.6 4,007,018 - hycE OKFHMN_20590 0.46 +0.3 4,007,201 - hycE OKFHMN_20590 0.56 -0.6 4,007,515 + hycE OKFHMN_20590 0.75 +0.9 4,007,536 + hycE OKFHMN_20590 0.76 -0.2 4,007,537 - hycE OKFHMN_20590 0.76 -0.5 4,007,549 + hycE OKFHMN_20590 0.77 -0.0 4,007,550 - hycE OKFHMN_20590 0.77 +0.1 4,007,620 + hycE OKFHMN_20590 0.81 +2.2 4,007,625 - hycE OKFHMN_20590 0.81 -1.5 4,007,715 - hycE OKFHMN_20590 0.87 +0.2 4,007,715 - hycE OKFHMN_20590 0.87 +0.0 4,007,766 - hycE OKFHMN_20590 0.90 +0.3 4,007,866 + -0.6 4,007,942 + +0.1 4,007,960 - -0.9 4,008,364 + hycF OKFHMN_20595 0.76 -0.6 4,008,478 + -0.0 4,008,507 - -0.0 4,008,741 - hycG OKFHMN_20600 0.32 -0.4 4,008,830 - hycG OKFHMN_20600 0.43 +0.8 4,008,830 - hycG OKFHMN_20600 0.43 +0.0 4,008,916 + hycG OKFHMN_20600 0.55 -0.2 4,008,916 + hycG OKFHMN_20600 0.55 -1.3 4,008,917 - hycG OKFHMN_20600 0.55 -0.7 4,008,917 - hycG OKFHMN_20600 0.55 -0.3
Or see this region's nucleotide sequence