Strain Fitness in Escherichia coli ECRC100 around OKFHMN_18525

Experiment: Bas58

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Bas58
3,592,620	-	uxaC	OKFHMN_18520	0.42	-0.8
3,592,723	+	uxaC	OKFHMN_18520	0.50	-0.1
3,592,723	+	uxaC	OKFHMN_18520	0.50	+0.2
3,592,724	-	uxaC	OKFHMN_18520	0.50	+1.3
3,592,858	-	uxaC	OKFHMN_18520	0.59	-0.4
3,592,927	+	uxaC	OKFHMN_18520	0.64	-0.0
3,592,928	-	uxaC	OKFHMN_18520	0.64	-0.4
3,592,931	-	uxaC	OKFHMN_18520	0.64	+1.3
3,592,969	-	uxaC	OKFHMN_18520	0.67	+0.4
3,593,131	+	uxaC	OKFHMN_18520	0.78	-0.6
3,593,264	-	uxaC	OKFHMN_18520	0.88	+0.7
3,593,395	+				+0.4
3,593,396	-				+1.0
3,593,396	-				+0.1
3,593,432	+				-0.1
3,593,432	+				-0.5
3,593,433	-				+0.4
3,593,455	+				-0.1
3,593,455	+				-0.6
3,593,456	-				+0.9
3,593,496	-				+0.7
3,593,575	-				+0.4
3,593,638	+	uxaA	OKFHMN_18525	0.13	+0.0
3,593,685	+	uxaA	OKFHMN_18525	0.16	+1.7
3,593,686	-	uxaA	OKFHMN_18525	0.16	+0.2
3,593,686	-	uxaA	OKFHMN_18525	0.16	+0.2
3,593,717	-	uxaA	OKFHMN_18525	0.18	-1.4
3,593,779	+	uxaA	OKFHMN_18525	0.22	-0.2
3,593,938	+	uxaA	OKFHMN_18525	0.33	+0.3
3,593,939	-	uxaA	OKFHMN_18525	0.33	-1.3
3,593,939	-	uxaA	OKFHMN_18525	0.33	-0.5
3,593,939	-	uxaA	OKFHMN_18525	0.33	+0.4
3,593,970	+	uxaA	OKFHMN_18525	0.35	+0.1
3,593,970	+	uxaA	OKFHMN_18525	0.35	+0.6
3,593,970	+	uxaA	OKFHMN_18525	0.35	-0.3
3,593,971	-	uxaA	OKFHMN_18525	0.35	+0.0
3,594,172	+	uxaA	OKFHMN_18525	0.49	+0.1
3,594,172	+	uxaA	OKFHMN_18525	0.49	-0.9
3,594,173	-	uxaA	OKFHMN_18525	0.49	+0.6
3,594,192	+	uxaA	OKFHMN_18525	0.50	-0.5
3,594,267	+	uxaA	OKFHMN_18525	0.55	-0.7
3,594,302	-	uxaA	OKFHMN_18525	0.57	-0.6
3,594,302	-	uxaA	OKFHMN_18525	0.57	-0.5
3,594,324	+	uxaA	OKFHMN_18525	0.59	+0.1
3,594,324	+	uxaA	OKFHMN_18525	0.59	+0.1
3,594,325	-	uxaA	OKFHMN_18525	0.59	-0.4
3,594,325	-	uxaA	OKFHMN_18525	0.59	+1.1
3,594,466	+	uxaA	OKFHMN_18525	0.68	-0.2
3,594,466	+	uxaA	OKFHMN_18525	0.68	+0.1
3,594,519	+	uxaA	OKFHMN_18525	0.72	-0.2
3,594,519	+	uxaA	OKFHMN_18525	0.72	+0.2
3,594,519	+	uxaA	OKFHMN_18525	0.72	-0.3
3,594,519	+	uxaA	OKFHMN_18525	0.72	+0.1
3,594,687	+	uxaA	OKFHMN_18525	0.83	+0.0
3,594,739	-	uxaA	OKFHMN_18525	0.87	-0.4
3,594,933	-				-0.6
3,594,935	-				+0.4
3,594,935	-				-1.6
3,594,953	+				-0.9
3,594,973	+				-0.6
3,595,016	-				+1.1
3,595,072	+				+0.4
3,595,073	-				+0.7
3,595,128	-	ygjV	OKFHMN_18530	0.20	+0.1
3,595,147	-	ygjV	OKFHMN_18530	0.23	-0.8
3,595,195	+	ygjV	OKFHMN_18530	0.32	+0.2
3,595,196	-	ygjV	OKFHMN_18530	0.32	+1.0
3,595,217	-	ygjV	OKFHMN_18530	0.36	+1.2
3,595,217	-	ygjV	OKFHMN_18530	0.36	+0.2
3,595,237	-	ygjV	OKFHMN_18530	0.39	-1.6
3,595,243	-	ygjV	OKFHMN_18530	0.41	-0.4
3,595,256	-	ygjV	OKFHMN_18530	0.43	-0.6
3,595,337	-	ygjV	OKFHMN_18530	0.58	+0.1
3,595,337	-	ygjV	OKFHMN_18530	0.58	-0.9
3,595,357	+	ygjV	OKFHMN_18530	0.61	+0.4
3,595,357	+	ygjV	OKFHMN_18530	0.61	-1.0
3,595,483	+	ygjV	OKFHMN_18530	0.84	-1.4
3,595,580	+				-1.1
3,595,580	+				+0.1
3,595,687	-				-0.0
3,595,697	+				+0.4
3,595,698	-				-2.4
3,595,748	+	sstT	OKFHMN_18535	0.14	+0.1
3,595,752	-	sstT	OKFHMN_18535	0.14	+0.6
3,595,863	-	sstT	OKFHMN_18535	0.23	-1.8
3,595,871	+	sstT	OKFHMN_18535	0.24	-1.1
3,595,872	-	sstT	OKFHMN_18535	0.24	+0.4
3,595,872	-	sstT	OKFHMN_18535	0.24	-0.1
3,595,872	-	sstT	OKFHMN_18535	0.24	-0.3
3,595,872	-	sstT	OKFHMN_18535	0.24	-0.9