Strain Fitness in Escherichia coli ECRC100 around OKFHMN_15790

Experiment: Bas58

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntehaG and OKFHMN_15790 are separated by 43 nucleotidesOKFHMN_15790 and yibL are separated by 644 nucleotides OKFHMN_15785: ehaG - trimeric autotransporter adhesin EhaG, at 3,051,203 to 3,055,969 ehaG OKFHMN_15790: OKFHMN_15790 - DUF3251 domain-containing protein, at 3,056,013 to 3,056,594 _15790 OKFHMN_15795: yibL - YibL family ribosome-associated protein, at 3,057,239 to 3,057,601 yibL Position (kb) 3056 3057Strain fitness (log2 ratio) -2 -1 0 1 2at 3055.028 kb on - strand, within ehaGat 3055.028 kb on - strand, within ehaGat 3055.070 kb on + strand, within ehaGat 3055.192 kb on + strand, within ehaGat 3055.192 kb on + strand, within ehaGat 3055.192 kb on + strand, within ehaGat 3055.192 kb on + strand, within ehaGat 3055.201 kb on + strand, within ehaGat 3055.234 kb on + strand, within ehaGat 3055.234 kb on + strand, within ehaGat 3055.235 kb on - strand, within ehaGat 3055.235 kb on - strand, within ehaGat 3055.235 kb on - strand, within ehaGat 3055.235 kb on - strand, within ehaGat 3055.235 kb on - strand, within ehaGat 3055.237 kb on + strand, within ehaGat 3055.238 kb on - strand, within ehaGat 3055.238 kb on - strand, within ehaGat 3055.258 kb on + strand, within ehaGat 3055.336 kb on + strand, within ehaGat 3055.397 kb on - strand, within ehaGat 3055.397 kb on - strand, within ehaGat 3055.480 kb on + strand, within ehaGat 3055.481 kb on - strand, within ehaGat 3055.481 kb on - strand, within ehaGat 3055.562 kb on + strandat 3055.563 kb on - strandat 3055.564 kb on + strandat 3055.565 kb on - strandat 3055.565 kb on - strandat 3055.651 kb on + strandat 3055.651 kb on + strandat 3055.652 kb on - strandat 3055.652 kb on - strandat 3055.652 kb on - strandat 3055.654 kb on - strandat 3055.654 kb on - strandat 3055.667 kb on + strandat 3055.668 kb on - strandat 3055.668 kb on - strandat 3055.668 kb on - strandat 3055.668 kb on - strandat 3055.677 kb on + strandat 3055.677 kb on + strandat 3055.711 kb on + strandat 3055.718 kb on - strandat 3055.739 kb on + strandat 3055.739 kb on + strandat 3055.740 kb on - strandat 3055.741 kb on + strandat 3055.741 kb on + strandat 3055.776 kb on + strandat 3055.870 kb on + strandat 3055.924 kb on - strandat 3056.098 kb on + strand, within OKFHMN_15790at 3056.262 kb on - strand, within OKFHMN_15790at 3056.292 kb on + strand, within OKFHMN_15790at 3056.460 kb on + strand, within OKFHMN_15790at 3056.627 kb on - strandat 3056.766 kb on + strandat 3057.212 kb on + strandat 3057.241 kb on - strandat 3057.253 kb on + strandat 3057.498 kb on + strand, within yibLat 3057.499 kb on - strand, within yibL

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas58
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3,055,028 - ehaG OKFHMN_15785 0.80 -0.7
3,055,028 - ehaG OKFHMN_15785 0.80 -0.4
3,055,070 + ehaG OKFHMN_15785 0.81 -0.1
3,055,192 + ehaG OKFHMN_15785 0.84 -0.1
3,055,192 + ehaG OKFHMN_15785 0.84 +0.4
3,055,192 + ehaG OKFHMN_15785 0.84 +1.4
3,055,192 + ehaG OKFHMN_15785 0.84 +0.6
3,055,201 + ehaG OKFHMN_15785 0.84 -0.1
3,055,234 + ehaG OKFHMN_15785 0.85 -0.1
3,055,234 + ehaG OKFHMN_15785 0.85 -0.1
3,055,235 - ehaG OKFHMN_15785 0.85 +0.3
3,055,235 - ehaG OKFHMN_15785 0.85 +1.8
3,055,235 - ehaG OKFHMN_15785 0.85 +0.4
3,055,235 - ehaG OKFHMN_15785 0.85 -1.8
3,055,235 - ehaG OKFHMN_15785 0.85 -0.2
3,055,237 + ehaG OKFHMN_15785 0.85 +0.1
3,055,238 - ehaG OKFHMN_15785 0.85 -0.4
3,055,238 - ehaG OKFHMN_15785 0.85 -1.4
3,055,258 + ehaG OKFHMN_15785 0.85 -1.1
3,055,336 + ehaG OKFHMN_15785 0.87 +0.2
3,055,397 - ehaG OKFHMN_15785 0.88 -0.0
3,055,397 - ehaG OKFHMN_15785 0.88 +0.8
3,055,480 + ehaG OKFHMN_15785 0.90 +1.0
3,055,481 - ehaG OKFHMN_15785 0.90 -1.2
3,055,481 - ehaG OKFHMN_15785 0.90 -0.2
3,055,562 + +2.4
3,055,563 - -1.7
3,055,564 + +0.6
3,055,565 - -0.0
3,055,565 - -0.5
3,055,651 + -0.3
3,055,651 + -0.3
3,055,652 - -0.0
3,055,652 - +0.6
3,055,652 - -1.2
3,055,654 - -0.2
3,055,654 - -0.1
3,055,667 + -0.2
3,055,668 - +1.0
3,055,668 - -0.7
3,055,668 - -0.1
3,055,668 - +0.3
3,055,677 + +1.4
3,055,677 + -0.3
3,055,711 + +1.8
3,055,718 - +1.0
3,055,739 + +0.9
3,055,739 + -0.2
3,055,740 - -0.0
3,055,741 + -1.3
3,055,741 + +0.2
3,055,776 + -0.1
3,055,870 + +0.6
3,055,924 - -0.2
3,056,098 + OKFHMN_15790 0.15 -0.1
3,056,262 - OKFHMN_15790 0.43 +0.1
3,056,292 + OKFHMN_15790 0.48 +0.4
3,056,460 + OKFHMN_15790 0.77 -0.4
3,056,627 - -1.4
3,056,766 + +0.2
3,057,212 + -0.2
3,057,241 - -0.0
3,057,253 + -0.1
3,057,498 + yibL OKFHMN_15795 0.71 -0.2
3,057,499 - yibL OKFHMN_15795 0.72 -0.4

Or see this region's nucleotide sequence