Strain Fitness in Escherichia coli ECRC100 around OKFHMN_11690

Experiment: Bas58

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntzorA and zorB are separated by 6 nucleotideszorB and zorE are separated by 3 nucleotides OKFHMN_11685: zorA - Zorya protein ZorA, at 2,237,855 to 2,239,507 zorA OKFHMN_11690: zorB - Zorya protein ZorB, at 2,239,514 to 2,240,221 zorB OKFHMN_11695: zorE - Zorya protein ZorE, at 2,240,225 to 2,241,328 zorE Position (kb) 2239 2240 2241Strain fitness (log2 ratio) -1 0 1at 2238.912 kb on + strand, within zorAat 2239.053 kb on + strand, within zorAat 2239.054 kb on - strand, within zorAat 2239.311 kb on + strand, within zorAat 2239.526 kb on - strandat 2239.631 kb on + strand, within zorBat 2239.702 kb on - strand, within zorBat 2240.095 kb on - strand, within zorBat 2240.329 kb on + strandat 2240.362 kb on + strand, within zorEat 2240.653 kb on + strand, within zorEat 2240.918 kb on + strand, within zorEat 2241.115 kb on + strand, within zorE

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas58
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2,238,912 + zorA OKFHMN_11685 0.64 +0.1
2,239,053 + zorA OKFHMN_11685 0.72 +0.3
2,239,054 - zorA OKFHMN_11685 0.73 -0.3
2,239,311 + zorA OKFHMN_11685 0.88 -0.0
2,239,526 - +0.4
2,239,631 + zorB OKFHMN_11690 0.17 -0.1
2,239,702 - zorB OKFHMN_11690 0.27 +0.7
2,240,095 - zorB OKFHMN_11690 0.82 +1.7
2,240,329 + -0.3
2,240,362 + zorE OKFHMN_11695 0.12 -0.0
2,240,653 + zorE OKFHMN_11695 0.39 -0.1
2,240,918 + zorE OKFHMN_11695 0.63 +1.7
2,241,115 + zorE OKFHMN_11695 0.81 -0.8

Or see this region's nucleotide sequence