Strain Fitness in Escherichia coli ECRC100 around OKFHMN_09810

Experiment: Bas58

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOKFHMN_09795 and OKFHMN_09800 are separated by 180 nucleotidesOKFHMN_09800 and OKFHMN_09805 are separated by 47 nucleotidesOKFHMN_09805 and rhsA overlap by 17 nucleotidesrhsA and yafF are separated by 2 nucleotides OKFHMN_09795: OKFHMN_09795 - ISAs1-like element ISEc26 family transposase, at 1,823,266 to 1,824,438 _09795 OKFHMN_09800: OKFHMN_09800 - dCTP deaminase, at 1,824,619 to 1,824,882 _09800 OKFHMN_09805: OKFHMN_09805 - YdcD, at 1,824,930 to 1,825,100 _09805 OKFHMN_09810: rhsA - RHS repeat protein, at 1,825,084 to 1,826,844 rhsA OKFHMN_09815: yafF - ISAs1 family transposase, at 1,826,847 to 1,827,983 yafF Position (kb) 1825 1826 1827Strain fitness (log2 ratio) -1 0 1at 1824.115 kb on + strand, within OKFHMN_09795at 1824.118 kb on + strand, within OKFHMN_09795at 1824.460 kb on + strandat 1824.812 kb on + strand, within OKFHMN_09800at 1825.089 kb on - strandat 1825.344 kb on + strand, within rhsAat 1825.344 kb on + strand, within rhsAat 1825.344 kb on + strand, within rhsAat 1825.364 kb on + strand, within rhsAat 1825.365 kb on - strand, within rhsAat 1825.423 kb on - strand, within rhsAat 1825.440 kb on - strand, within rhsAat 1825.496 kb on + strand, within rhsAat 1825.518 kb on + strand, within rhsAat 1825.550 kb on - strand, within rhsAat 1825.558 kb on + strand, within rhsAat 1825.581 kb on - strand, within rhsAat 1825.581 kb on - strand, within rhsAat 1825.584 kb on + strand, within rhsAat 1825.584 kb on + strand, within rhsAat 1825.623 kb on + strand, within rhsAat 1825.624 kb on - strand, within rhsAat 1825.650 kb on - strand, within rhsAat 1825.664 kb on + strand, within rhsAat 1825.665 kb on - strand, within rhsAat 1825.665 kb on - strand, within rhsAat 1825.839 kb on - strand, within rhsAat 1825.865 kb on + strand, within rhsAat 1826.133 kb on - strand, within rhsAat 1826.294 kb on + strand, within rhsAat 1826.472 kb on - strand, within rhsAat 1826.472 kb on - strand, within rhsAat 1826.472 kb on - strand, within rhsAat 1826.747 kb on - strandat 1826.765 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas58
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1,824,115 + OKFHMN_09795 0.72 -0.8
1,824,118 + OKFHMN_09795 0.73 +0.3
1,824,460 + +1.7
1,824,812 + OKFHMN_09800 0.73 -0.3
1,825,089 - -0.4
1,825,344 + rhsA OKFHMN_09810 0.15 -0.2
1,825,344 + rhsA OKFHMN_09810 0.15 -0.7
1,825,344 + rhsA OKFHMN_09810 0.15 +0.1
1,825,364 + rhsA OKFHMN_09810 0.16 -1.2
1,825,365 - rhsA OKFHMN_09810 0.16 -1.2
1,825,423 - rhsA OKFHMN_09810 0.19 +0.2
1,825,440 - rhsA OKFHMN_09810 0.20 +0.1
1,825,496 + rhsA OKFHMN_09810 0.23 -0.0
1,825,518 + rhsA OKFHMN_09810 0.25 -0.5
1,825,550 - rhsA OKFHMN_09810 0.26 -0.2
1,825,558 + rhsA OKFHMN_09810 0.27 -0.2
1,825,581 - rhsA OKFHMN_09810 0.28 +0.1
1,825,581 - rhsA OKFHMN_09810 0.28 +0.7
1,825,584 + rhsA OKFHMN_09810 0.28 -0.2
1,825,584 + rhsA OKFHMN_09810 0.28 -0.4
1,825,623 + rhsA OKFHMN_09810 0.31 +0.4
1,825,624 - rhsA OKFHMN_09810 0.31 +0.8
1,825,650 - rhsA OKFHMN_09810 0.32 +0.1
1,825,664 + rhsA OKFHMN_09810 0.33 +0.4
1,825,665 - rhsA OKFHMN_09810 0.33 -1.1
1,825,665 - rhsA OKFHMN_09810 0.33 +0.2
1,825,839 - rhsA OKFHMN_09810 0.43 +0.3
1,825,865 + rhsA OKFHMN_09810 0.44 +0.2
1,826,133 - rhsA OKFHMN_09810 0.60 -0.6
1,826,294 + rhsA OKFHMN_09810 0.69 -0.8
1,826,472 - rhsA OKFHMN_09810 0.79 +0.0
1,826,472 - rhsA OKFHMN_09810 0.79 +0.3
1,826,472 - rhsA OKFHMN_09810 0.79 +0.5
1,826,747 - +0.1
1,826,765 + +0.2

Or see this region's nucleotide sequence