Experiment: Bas58
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OKFHMN_09795 and OKFHMN_09800 are separated by 180 nucleotides OKFHMN_09800 and OKFHMN_09805 are separated by 47 nucleotides OKFHMN_09805 and rhsA overlap by 17 nucleotides rhsA and yafF are separated by 2 nucleotides
OKFHMN_09795: OKFHMN_09795 - ISAs1-like element ISEc26 family transposase, at 1,823,266 to 1,824,438
_09795
OKFHMN_09800: OKFHMN_09800 - dCTP deaminase, at 1,824,619 to 1,824,882
_09800
OKFHMN_09805: OKFHMN_09805 - YdcD, at 1,824,930 to 1,825,100
_09805
OKFHMN_09810: rhsA - RHS repeat protein, at 1,825,084 to 1,826,844
rhsA
OKFHMN_09815: yafF - ISAs1 family transposase, at 1,826,847 to 1,827,983
yafF
Position (kb)
1825
1826
1827 Strain fitness (log2 ratio)
-1
0
1 at 1824.115 kb on + strand, within OKFHMN_09795 at 1824.118 kb on + strand, within OKFHMN_09795 at 1824.460 kb on + strand at 1824.812 kb on + strand, within OKFHMN_09800 at 1825.089 kb on - strand at 1825.344 kb on + strand, within rhsA at 1825.344 kb on + strand, within rhsA at 1825.344 kb on + strand, within rhsA at 1825.364 kb on + strand, within rhsA at 1825.365 kb on - strand, within rhsA at 1825.423 kb on - strand, within rhsA at 1825.440 kb on - strand, within rhsA at 1825.496 kb on + strand, within rhsA at 1825.518 kb on + strand, within rhsA at 1825.550 kb on - strand, within rhsA at 1825.558 kb on + strand, within rhsA at 1825.581 kb on - strand, within rhsA at 1825.581 kb on - strand, within rhsA at 1825.584 kb on + strand, within rhsA at 1825.584 kb on + strand, within rhsA at 1825.623 kb on + strand, within rhsA at 1825.624 kb on - strand, within rhsA at 1825.650 kb on - strand, within rhsA at 1825.664 kb on + strand, within rhsA at 1825.665 kb on - strand, within rhsA at 1825.665 kb on - strand, within rhsA at 1825.839 kb on - strand, within rhsA at 1825.865 kb on + strand, within rhsA at 1826.133 kb on - strand, within rhsA at 1826.294 kb on + strand, within rhsA at 1826.472 kb on - strand, within rhsA at 1826.472 kb on - strand, within rhsA at 1826.472 kb on - strand, within rhsA at 1826.747 kb on - strand at 1826.765 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas58 remove 1,824,115 + OKFHMN_09795 0.72 -0.8 1,824,118 + OKFHMN_09795 0.73 +0.3 1,824,460 + +1.7 1,824,812 + OKFHMN_09800 0.73 -0.3 1,825,089 - -0.4 1,825,344 + rhsA OKFHMN_09810 0.15 -0.2 1,825,344 + rhsA OKFHMN_09810 0.15 -0.7 1,825,344 + rhsA OKFHMN_09810 0.15 +0.1 1,825,364 + rhsA OKFHMN_09810 0.16 -1.2 1,825,365 - rhsA OKFHMN_09810 0.16 -1.2 1,825,423 - rhsA OKFHMN_09810 0.19 +0.2 1,825,440 - rhsA OKFHMN_09810 0.20 +0.1 1,825,496 + rhsA OKFHMN_09810 0.23 -0.0 1,825,518 + rhsA OKFHMN_09810 0.25 -0.5 1,825,550 - rhsA OKFHMN_09810 0.26 -0.2 1,825,558 + rhsA OKFHMN_09810 0.27 -0.2 1,825,581 - rhsA OKFHMN_09810 0.28 +0.1 1,825,581 - rhsA OKFHMN_09810 0.28 +0.7 1,825,584 + rhsA OKFHMN_09810 0.28 -0.2 1,825,584 + rhsA OKFHMN_09810 0.28 -0.4 1,825,623 + rhsA OKFHMN_09810 0.31 +0.4 1,825,624 - rhsA OKFHMN_09810 0.31 +0.8 1,825,650 - rhsA OKFHMN_09810 0.32 +0.1 1,825,664 + rhsA OKFHMN_09810 0.33 +0.4 1,825,665 - rhsA OKFHMN_09810 0.33 -1.1 1,825,665 - rhsA OKFHMN_09810 0.33 +0.2 1,825,839 - rhsA OKFHMN_09810 0.43 +0.3 1,825,865 + rhsA OKFHMN_09810 0.44 +0.2 1,826,133 - rhsA OKFHMN_09810 0.60 -0.6 1,826,294 + rhsA OKFHMN_09810 0.69 -0.8 1,826,472 - rhsA OKFHMN_09810 0.79 +0.0 1,826,472 - rhsA OKFHMN_09810 0.79 +0.3 1,826,472 - rhsA OKFHMN_09810 0.79 +0.5 1,826,747 - +0.1 1,826,765 + +0.2
Or see this region's nucleotide sequence