Strain Fitness in Escherichia coli ECRC100 around OKFHMN_07845

Experiment: Bas58

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntpurK and arcC are separated by 138 nucleotidesarcC and ylbF overlap by 4 nucleotidesylbF and ylbE are separated by 10 nucleotides OKFHMN_07840: purK - 5-(carboxyamino)imidazole ribonucleotide synthase, at 1,428,265 to 1,429,332 purK OKFHMN_07845: arcC - carbamate kinase, at 1,429,471 to 1,430,364 arcC OKFHMN_07850: ylbF - Uncharacterized protein YlbF, at 1,430,361 to 1,431,176 ylbF OKFHMN_07855: ylbE - Uncharacterized protein YlbE, at 1,431,187 to 1,432,446 ylbE Position (kb) 1429 1430 1431Strain fitness (log2 ratio) -1 0 1 2at 1428.602 kb on + strand, within purKat 1428.602 kb on + strand, within purKat 1428.621 kb on + strand, within purKat 1428.920 kb on - strand, within purKat 1428.920 kb on - strand, within purKat 1428.996 kb on + strand, within purKat 1429.047 kb on - strand, within purKat 1429.047 kb on - strand, within purKat 1429.125 kb on + strand, within purKat 1429.139 kb on - strand, within purKat 1429.178 kb on - strand, within purKat 1429.291 kb on + strandat 1429.292 kb on - strandat 1429.321 kb on - strandat 1429.382 kb on + strandat 1429.405 kb on - strandat 1429.684 kb on + strand, within arcCat 1430.106 kb on + strand, within arcCat 1430.162 kb on - strand, within arcCat 1430.327 kb on - strandat 1430.380 kb on - strandat 1430.465 kb on + strand, within ylbFat 1430.538 kb on + strand, within ylbFat 1430.538 kb on + strand, within ylbFat 1430.538 kb on + strand, within ylbFat 1430.539 kb on - strand, within ylbFat 1430.619 kb on + strand, within ylbFat 1430.630 kb on - strand, within ylbFat 1430.632 kb on + strand, within ylbFat 1430.633 kb on - strand, within ylbFat 1430.767 kb on - strand, within ylbFat 1430.882 kb on + strand, within ylbFat 1430.985 kb on + strand, within ylbFat 1431.111 kb on + strandat 1431.143 kb on + strandat 1431.178 kb on - strandat 1431.321 kb on + strand, within ylbEat 1431.322 kb on - strand, within ylbE

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas58
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1,428,602 + purK OKFHMN_07840 0.32 -0.1
1,428,602 + purK OKFHMN_07840 0.32 -0.3
1,428,621 + purK OKFHMN_07840 0.33 -1.6
1,428,920 - purK OKFHMN_07840 0.61 +0.3
1,428,920 - purK OKFHMN_07840 0.61 -0.6
1,428,996 + purK OKFHMN_07840 0.68 -0.0
1,429,047 - purK OKFHMN_07840 0.73 -1.2
1,429,047 - purK OKFHMN_07840 0.73 +0.1
1,429,125 + purK OKFHMN_07840 0.81 +0.6
1,429,139 - purK OKFHMN_07840 0.82 -0.9
1,429,178 - purK OKFHMN_07840 0.85 +1.1
1,429,291 + +0.1
1,429,292 - +0.2
1,429,321 - -0.4
1,429,382 + +0.5
1,429,405 - +0.0
1,429,684 + arcC OKFHMN_07845 0.24 -1.4
1,430,106 + arcC OKFHMN_07845 0.71 +1.0
1,430,162 - arcC OKFHMN_07845 0.77 -0.5
1,430,327 - +0.0
1,430,380 - +0.5
1,430,465 + ylbF OKFHMN_07850 0.13 -1.1
1,430,538 + ylbF OKFHMN_07850 0.22 -0.5
1,430,538 + ylbF OKFHMN_07850 0.22 +1.8
1,430,538 + ylbF OKFHMN_07850 0.22 +1.4
1,430,539 - ylbF OKFHMN_07850 0.22 +0.0
1,430,619 + ylbF OKFHMN_07850 0.32 -0.1
1,430,630 - ylbF OKFHMN_07850 0.33 +0.2
1,430,632 + ylbF OKFHMN_07850 0.33 +0.7
1,430,633 - ylbF OKFHMN_07850 0.33 +0.5
1,430,767 - ylbF OKFHMN_07850 0.50 -0.3
1,430,882 + ylbF OKFHMN_07850 0.64 -0.6
1,430,985 + ylbF OKFHMN_07850 0.76 -0.7
1,431,111 + -0.2
1,431,143 + +0.3
1,431,178 - -0.0
1,431,321 + ylbE OKFHMN_07855 0.11 -0.2
1,431,322 - ylbE OKFHMN_07855 0.11 -0.1

Or see this region's nucleotide sequence