Strain Fitness in Escherichia coli ECRC100 around OKFHMN_07045

Experiment: Bas58

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOKFHMN_07045 and rhsA overlap by 4 nucleotides OKFHMN_07045: OKFHMN_07045 - Uncharacterized protein YbfC, at 1,260,529 to 1,261,098 _07045 OKFHMN_07050: rhsA - RHS element protein, at 1,261,095 to 1,265,294 rhsA Position (kb) 1260 1261 1262Strain fitness (log2 ratio) -1 0 1 2at 1259.720 kb on + strandat 1259.823 kb on + strandat 1260.070 kb on + strandat 1260.623 kb on + strand, within OKFHMN_07045at 1260.648 kb on - strand, within OKFHMN_07045at 1260.730 kb on - strand, within OKFHMN_07045at 1261.203 kb on + strandat 1261.223 kb on + strandat 1261.224 kb on - strandat 1261.224 kb on - strandat 1261.361 kb on - strandat 1261.361 kb on - strandat 1261.452 kb on + strandat 1261.452 kb on + strandat 1261.464 kb on + strandat 1261.534 kb on - strand, within rhsAat 1261.570 kb on - strand, within rhsAat 1261.573 kb on + strand, within rhsAat 1261.573 kb on + strand, within rhsA

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas58
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1,259,720 + -0.9
1,259,823 + +1.9
1,260,070 + -0.3
1,260,623 + OKFHMN_07045 0.16 +0.1
1,260,648 - OKFHMN_07045 0.21 +0.5
1,260,730 - OKFHMN_07045 0.35 -0.2
1,261,203 + +1.6
1,261,223 + +0.6
1,261,224 - -0.3
1,261,224 - +0.4
1,261,361 - -1.3
1,261,361 - +0.0
1,261,452 + -0.5
1,261,452 + -0.6
1,261,464 + -0.4
1,261,534 - rhsA OKFHMN_07050 0.10 +0.3
1,261,570 - rhsA OKFHMN_07050 0.11 -0.7
1,261,573 + rhsA OKFHMN_07050 0.11 -0.4
1,261,573 + rhsA OKFHMN_07050 0.11 -0.5

Or see this region's nucleotide sequence