Experiment: Bas58
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt artP and artI are separated by 17 nucleotides artI and artQ are separated by 6 nucleotides artQ and artM overlap by 1 nucleotides artM and OKFHMN_05905 overlap by 1 nucleotides OKFHMN_05905 and artJ are separated by 153 nucleotides
OKFHMN_05885: artP - arginine ABC transporter ATP-binding protein ArtP, at 1,040,943 to 1,041,671
artP
OKFHMN_05890: artI - Putative ABC transporter arginine-binding protein 2, at 1,041,689 to 1,042,420
artI
OKFHMN_05895: artQ - arginine ABC transporter permease ArtQ, at 1,042,427 to 1,043,143
artQ
OKFHMN_05900: artM - arginine ABC transporter permease ArtM, at 1,043,143 to 1,043,811
artM
OKFHMN_05905: OKFHMN_05905 - hypothetical protein, at 1,043,811 to 1,043,948
_05905
OKFHMN_05915: artJ - ABC transporter substrate-binding protein ArtJ, at 1,044,102 to 1,044,833
artJ
Position (kb)
1042
1043
1044 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1041.428 kb on - strand, within artP at 1041.518 kb on + strand, within artP at 1041.596 kb on + strand, within artP at 1041.651 kb on - strand at 1041.999 kb on - strand, within artI at 1042.001 kb on + strand, within artI at 1042.040 kb on + strand, within artI at 1042.041 kb on - strand, within artI at 1042.090 kb on + strand, within artI at 1042.117 kb on + strand, within artI at 1042.200 kb on + strand, within artI at 1042.200 kb on + strand, within artI at 1042.398 kb on - strand at 1042.622 kb on - strand, within artQ at 1042.673 kb on - strand, within artQ at 1042.778 kb on + strand, within artQ at 1042.867 kb on + strand, within artQ at 1043.011 kb on + strand, within artQ at 1043.033 kb on - strand, within artQ at 1043.060 kb on + strand, within artQ at 1043.293 kb on + strand, within artM at 1043.418 kb on - strand, within artM at 1043.473 kb on + strand, within artM at 1043.474 kb on - strand, within artM at 1043.594 kb on - strand, within artM at 1043.638 kb on + strand, within artM at 1043.646 kb on + strand, within artM at 1043.668 kb on + strand, within artM at 1043.695 kb on + strand, within artM at 1043.696 kb on - strand, within artM at 1043.727 kb on + strand, within artM at 1043.731 kb on + strand, within artM at 1043.809 kb on + strand at 1043.947 kb on - strand at 1044.070 kb on + strand at 1044.076 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas58 remove 1,041,428 - artP OKFHMN_05885 0.67 +0.0 1,041,518 + artP OKFHMN_05885 0.79 +0.3 1,041,596 + artP OKFHMN_05885 0.90 -2.5 1,041,651 - -0.5 1,041,999 - artI OKFHMN_05890 0.42 +0.2 1,042,001 + artI OKFHMN_05890 0.43 -0.4 1,042,040 + artI OKFHMN_05890 0.48 +1.3 1,042,041 - artI OKFHMN_05890 0.48 -0.9 1,042,090 + artI OKFHMN_05890 0.55 +1.3 1,042,117 + artI OKFHMN_05890 0.58 -0.6 1,042,200 + artI OKFHMN_05890 0.70 -0.7 1,042,200 + artI OKFHMN_05890 0.70 -0.2 1,042,398 - -0.3 1,042,622 - artQ OKFHMN_05895 0.27 +0.6 1,042,673 - artQ OKFHMN_05895 0.34 +1.3 1,042,778 + artQ OKFHMN_05895 0.49 -0.7 1,042,867 + artQ OKFHMN_05895 0.61 -0.0 1,043,011 + artQ OKFHMN_05895 0.81 -1.9 1,043,033 - artQ OKFHMN_05895 0.85 +0.3 1,043,060 + artQ OKFHMN_05895 0.88 +0.4 1,043,293 + artM OKFHMN_05900 0.22 +0.6 1,043,418 - artM OKFHMN_05900 0.41 +0.1 1,043,473 + artM OKFHMN_05900 0.49 -0.3 1,043,474 - artM OKFHMN_05900 0.49 +0.7 1,043,594 - artM OKFHMN_05900 0.67 +1.9 1,043,638 + artM OKFHMN_05900 0.74 -0.4 1,043,646 + artM OKFHMN_05900 0.75 +0.7 1,043,668 + artM OKFHMN_05900 0.78 -1.0 1,043,695 + artM OKFHMN_05900 0.83 -0.1 1,043,696 - artM OKFHMN_05900 0.83 -0.7 1,043,727 + artM OKFHMN_05900 0.87 -0.2 1,043,731 + artM OKFHMN_05900 0.88 +0.4 1,043,809 + -0.4 1,043,947 - -1.0 1,044,070 + -0.4 1,044,076 + +0.7
Or see this region's nucleotide sequence