Strain Fitness in Escherichia coli ECRC100 around OKFHMN_04765

Experiment: Bas58

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntgfcE and etp overlap by 13 nucleotidesetp and etk are separated by 19 nucleotidesetk and appA are separated by 119 nucleotides OKFHMN_04755: gfcE - Putative polysaccharide export protein GfcE, at 791,092 to 792,231 gfcE OKFHMN_04760: etp - protein-tyrosine-phosphatase Etp, at 792,219 to 792,665 etp OKFHMN_04765: etk - tyrosine-protein kinase, at 792,685 to 794,865 etk OKFHMN_04770: appA - bifunctional acid phosphatase/4-phytase, at 794,985 to 796,289 appA Position (kb) 792 793 794 795Strain fitness (log2 ratio) -2 -1 0 1at 791.952 kb on + strand, within gfcEat 792.033 kb on + strand, within gfcEat 792.319 kb on + strand, within etpat 792.319 kb on + strand, within etpat 792.319 kb on + strand, within etpat 792.428 kb on + strand, within etpat 792.681 kb on + strandat 792.784 kb on - strandat 792.836 kb on + strandat 792.861 kb on + strandat 792.861 kb on + strandat 793.110 kb on + strand, within etkat 793.173 kb on + strand, within etkat 793.207 kb on - strand, within etkat 793.260 kb on + strand, within etkat 793.260 kb on + strand, within etkat 793.854 kb on + strand, within etkat 794.042 kb on + strand, within etkat 794.277 kb on + strand, within etkat 794.375 kb on + strand, within etkat 794.379 kb on + strand, within etkat 794.379 kb on + strand, within etkat 794.379 kb on + strand, within etkat 794.430 kb on + strand, within etkat 794.521 kb on - strand, within etkat 794.821 kb on + strandat 794.829 kb on + strandat 794.834 kb on - strandat 794.844 kb on + strandat 794.844 kb on + strandat 794.844 kb on + strandat 794.848 kb on + strandat 794.875 kb on + strandat 794.987 kb on - strandat 794.987 kb on - strandat 795.303 kb on - strand, within appAat 795.340 kb on - strand, within appAat 795.352 kb on + strand, within appAat 795.448 kb on - strand, within appAat 795.842 kb on + strand, within appAat 795.843 kb on - strand, within appA

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas58
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791,952 + gfcE OKFHMN_04755 0.75 -0.4
792,033 + gfcE OKFHMN_04755 0.83 +0.1
792,319 + etp OKFHMN_04760 0.22 +1.2
792,319 + etp OKFHMN_04760 0.22 +0.2
792,319 + etp OKFHMN_04760 0.22 -2.2
792,428 + etp OKFHMN_04760 0.47 -0.5
792,681 + +0.1
792,784 - -1.9
792,836 + -1.7
792,861 + -1.3
792,861 + +0.2
793,110 + etk OKFHMN_04765 0.19 -0.5
793,173 + etk OKFHMN_04765 0.22 +0.5
793,207 - etk OKFHMN_04765 0.24 +1.2
793,260 + etk OKFHMN_04765 0.26 -0.2
793,260 + etk OKFHMN_04765 0.26 +0.2
793,854 + etk OKFHMN_04765 0.54 +0.2
794,042 + etk OKFHMN_04765 0.62 -0.7
794,277 + etk OKFHMN_04765 0.73 +0.8
794,375 + etk OKFHMN_04765 0.77 -0.5
794,379 + etk OKFHMN_04765 0.78 +0.5
794,379 + etk OKFHMN_04765 0.78 -0.3
794,379 + etk OKFHMN_04765 0.78 +0.7
794,430 + etk OKFHMN_04765 0.80 -0.0
794,521 - etk OKFHMN_04765 0.84 -0.1
794,821 + +0.2
794,829 + -0.3
794,834 - +0.7
794,844 + +0.5
794,844 + +0.5
794,844 + +1.0
794,848 + +0.8
794,875 + -0.1
794,987 - -0.6
794,987 - +1.2
795,303 - appA OKFHMN_04770 0.24 +0.0
795,340 - appA OKFHMN_04770 0.27 +0.7
795,352 + appA OKFHMN_04770 0.28 -0.8
795,448 - appA OKFHMN_04770 0.35 +0.8
795,842 + appA OKFHMN_04770 0.66 +0.6
795,843 - appA OKFHMN_04770 0.66 +0.2

Or see this region's nucleotide sequence