Strain Fitness in Escherichia coli ECRC100 around OKFHMN_03950

Experiment: Bas58

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOKFHMN_03945 and cah are separated by 110 nucleotidescah and OKFHMN_03955 are separated by 372 nucleotides OKFHMN_03945: OKFHMN_03945 - dGTPase, at 626,613 to 628,997 _03945 OKFHMN_03950: cah - calcium-binding autotransporter Cah, at 629,108 to 631,957 cah OKFHMN_03955: OKFHMN_03955 - 50S ribosome-binding GTPase, at 632,330 to 633,202 _03955 Position (kb) 629 630 631 632Strain fitness (log2 ratio) -3 -2 -1 0 1at 629.062 kb on + strandat 629.203 kb on + strandat 629.556 kb on + strand, within cahat 629.557 kb on - strand, within cahat 629.732 kb on + strand, within cahat 629.733 kb on - strand, within cahat 630.089 kb on - strand, within cahat 630.089 kb on - strand, within cahat 630.091 kb on - strand, within cahat 630.091 kb on - strand, within cah

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas58
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629,062 + -2.2
629,203 + -0.8
629,556 + cah OKFHMN_03950 0.16 +1.2
629,557 - cah OKFHMN_03950 0.16 -1.3
629,732 + cah OKFHMN_03950 0.22 +0.9
629,733 - cah OKFHMN_03950 0.22 -0.8
630,089 - cah OKFHMN_03950 0.34 +0.2
630,089 - cah OKFHMN_03950 0.34 -2.8
630,091 - cah OKFHMN_03950 0.34 +1.2
630,091 - cah OKFHMN_03950 0.34 +0.6

Or see this region's nucleotide sequence