Strain Fitness in Escherichia coli ECRC100 around OKFHMN_02515

Experiment: Bas58

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntfabI_F203V and yciW are separated by 143 nucleotidesyciW and rnb are separated by 67 nucleotides OKFHMN_02510: fabI_F203V - enoyl-[acyl-carrier-protein] reductase FabI, at 393,171 to 393,959 _F203V OKFHMN_02515: yciW - Uncharacterized protein YciW, at 394,103 to 395,230 yciW OKFHMN_02520: rnb - exoribonuclease II, at 395,298 to 397,232 rnb Position (kb) 394 395 396Strain fitness (log2 ratio) -2 -1 0 1 2at 393.108 kb on + strandat 394.012 kb on - strandat 394.140 kb on - strandat 394.222 kb on - strand, within yciWat 394.412 kb on + strand, within yciWat 394.415 kb on + strand, within yciWat 394.430 kb on - strand, within yciWat 394.494 kb on - strand, within yciWat 394.749 kb on - strand, within yciWat 394.880 kb on - strand, within yciWat 395.159 kb on - strandat 395.193 kb on + strandat 395.274 kb on + strandat 395.746 kb on - strand, within rnb

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas58
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393,108 + +0.5
394,012 - +2.0
394,140 - +0.9
394,222 - yciW OKFHMN_02515 0.11 +1.2
394,412 + yciW OKFHMN_02515 0.27 +0.5
394,415 + yciW OKFHMN_02515 0.28 +0.2
394,430 - yciW OKFHMN_02515 0.29 +0.2
394,494 - yciW OKFHMN_02515 0.35 +0.2
394,749 - yciW OKFHMN_02515 0.57 -0.6
394,880 - yciW OKFHMN_02515 0.69 -1.1
395,159 - +0.3
395,193 + -1.6
395,274 + -0.4
395,746 - rnb OKFHMN_02520 0.23 -1.8

Or see this region's nucleotide sequence