Strain Fitness in Escherichia coli ECRC100 around OKFHMN_02335

Experiment: Bas58

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntycjV and pgmB are separated by 13 nucleotidespgmB and ycjT overlap by 4 nucleotides OKFHMN_02330: ycjV - Uncharacterized ABC transporter ATP-binding protein YcjV, at 355,199 to 356,281 ycjV OKFHMN_02335: pgmB - beta-phosphoglucomutase, at 356,295 to 356,954 pgmB OKFHMN_02340: ycjT - kojibiose phosphorylase, at 356,951 to 359,218 ycjT Position (kb) 356 357Strain fitness (log2 ratio) -2 -1 0 1at 355.314 kb on - strand, within ycjVat 355.376 kb on - strand, within ycjVat 355.612 kb on + strand, within ycjVat 356.012 kb on - strand, within ycjVat 356.298 kb on + strandat 356.358 kb on + strandat 356.525 kb on + strand, within pgmBat 356.834 kb on + strand, within pgmBat 356.938 kb on - strandat 357.040 kb on + strandat 357.092 kb on - strandat 357.245 kb on - strand, within ycjTat 357.390 kb on - strand, within ycjTat 357.580 kb on + strand, within ycjT

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas58
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355,314 - ycjV OKFHMN_02330 0.11 -0.4
355,376 - ycjV OKFHMN_02330 0.16 +0.7
355,612 + ycjV OKFHMN_02330 0.38 +0.1
356,012 - ycjV OKFHMN_02330 0.75 +0.0
356,298 + +0.9
356,358 + +0.7
356,525 + pgmB OKFHMN_02335 0.35 +0.2
356,834 + pgmB OKFHMN_02335 0.82 +0.5
356,938 - -0.2
357,040 + +1.2
357,092 - -2.0
357,245 - ycjT OKFHMN_02340 0.13 +0.2
357,390 - ycjT OKFHMN_02340 0.19 -0.8
357,580 + ycjT OKFHMN_02340 0.28 +0.9

Or see this region's nucleotide sequence