Strain Fitness in Escherichia coli ECRC100 around OKFHMN_01240

Experiment: Bas58

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntydeS and ydeR are separated by 12 nucleotidesydeR and ydeQ are separated by 59 nucleotidesydeQ and ydeP are separated by 333 nucleotides OKFHMN_01230: ydeS - Uncharacterized fimbrial-like protein YdeS, at 140,971 to 141,501 ydeS OKFHMN_01235: ydeR - Uncharacterized fimbrial-like protein YdeR, at 141,514 to 142,017 ydeR OKFHMN_01240: ydeQ - Uncharacterized fimbrial-like protein YdeQ, at 142,077 to 142,991 ydeQ OKFHMN_01245: ydeP - acid resistance putative oxidoreductase YdeP, at 143,325 to 145,604 ydeP Position (kb) 142 143Strain fitness (log2 ratio) -3 -2 -1 0 1at 141.674 kb on - strand, within ydeRat 141.723 kb on + strand, within ydeRat 142.357 kb on - strand, within ydeQat 142.535 kb on + strand, within ydeQat 143.236 kb on - strandat 143.612 kb on + strand, within ydeP

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas58
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141,674 - ydeR OKFHMN_01235 0.32 -0.3
141,723 + ydeR OKFHMN_01235 0.41 -0.1
142,357 - ydeQ OKFHMN_01240 0.31 +1.7
142,535 + ydeQ OKFHMN_01240 0.50 +0.1
143,236 - -2.9
143,612 + ydeP OKFHMN_01245 0.13 -0.5

Or see this region's nucleotide sequence