Experiment: Bas58
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt tqsA and mdtJ are separated by 411 nucleotides mdtJ and mdtI overlap by 14 nucleotides mdtI and ydgD are separated by 38 nucleotides ydgD and ydgU are separated by 99 nucleotides
OKFHMN_27700: tqsA - AI-2 transporter TqsA, at 5,335,672 to 5,336,706
tqsA
OKFHMN_27705: mdtJ - multidrug/spermidine efflux SMR transporter subunit MdtJ, at 5,337,118 to 5,337,483
mdtJ
OKFHMN_27710: mdtI - multidrug/spermidine efflux SMR transporter subunit MdtI, at 5,337,470 to 5,337,799
mdtI
OKFHMN_27715: ydgD - Uncharacterized serine protease YdgD, at 5,337,838 to 5,338,659
ydgD
OKFHMN_27720: ydgU - Uncharacterized protein YdgU, at 5,338,759 to 5,338,842
ydgU
Position (kb) 5337
5338 Strain fitness (log2 ratio) -1
0
1
2 at 5336.662 kb on - strand at 5336.738 kb on - strand at 5336.903 kb on + strand at 5336.932 kb on + strand at 5337.165 kb on + strand, within mdtJ at 5338.074 kb on - strand, within ydgD at 5338.203 kb on + strand, within ydgD at 5338.313 kb on - strand, within ydgD at 5338.653 kb on + strand at 5338.654 kb on - strand at 5338.677 kb on - strand at 5338.705 kb on + strand at 5338.712 kb on + strand at 5338.714 kb on + strand at 5338.754 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas58 remove 5,336,662 - +2.5 5,336,738 - +0.4 5,336,903 + -0.6 5,336,932 + -0.4 5,337,165 + mdtJ OKFHMN_27705 0.13 +1.5 5,338,074 - ydgD OKFHMN_27715 0.29 -0.8 5,338,203 + ydgD OKFHMN_27715 0.44 -0.1 5,338,313 - ydgD OKFHMN_27715 0.58 +0.9 5,338,653 + -1.1 5,338,654 - +0.5 5,338,677 - -0.1 5,338,705 + -0.4 5,338,712 + -0.1 5,338,714 + +0.5 5,338,754 + +0.7
Or see this region's nucleotide sequence