Experiment: Bas58
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt marR and OKFHMN_25960 overlap by 4 nucleotides OKFHMN_25960 and OKFHMN_25965 are separated by 23 nucleotides OKFHMN_25965 and OKFHMN_25970 are separated by 92 nucleotides OKFHMN_25970 and OKFHMN_25975 overlap by 4 nucleotides OKFHMN_25975 and OKFHMN_25980 are separated by 11 nucleotides OKFHMN_25980 and OKFHMN_25985 are separated by 10 nucleotides OKFHMN_25985 and OKFHMN_25990 are separated by 21 nucleotides
OKFHMN_25955: marR - MarR family transcriptional regulator, at 5,010,997 to 5,011,263
marR
OKFHMN_25960: OKFHMN_25960 - hypothetical protein, at 5,011,260 to 5,011,463
_25960
OKFHMN_25965: OKFHMN_25965 - Phage protein, at 5,011,487 to 5,011,903
_25965
OKFHMN_25970: OKFHMN_25970 - Membrane protein, at 5,011,996 to 5,012,109
_25970
OKFHMN_25975: OKFHMN_25975 - DUF4754 domain-containing protein, at 5,012,106 to 5,012,348
_25975
OKFHMN_25980: OKFHMN_25980 - hypothetical protein, at 5,012,360 to 5,012,638
_25980
OKFHMN_25985: OKFHMN_25985 - DUF4761 domain-containing protein, at 5,012,649 to 5,012,999
_25985
OKFHMN_25990: OKFHMN_25990 - DNA-binding protein, at 5,013,021 to 5,013,224
_25990
Position (kb) 5012
5013 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5011.248 kb on - strand at 5011.278 kb on + strand at 5011.324 kb on + strand, within OKFHMN_25960 at 5011.325 kb on - strand, within OKFHMN_25960 at 5011.431 kb on - strand, within OKFHMN_25960 at 5011.663 kb on - strand, within OKFHMN_25965 at 5012.913 kb on - strand, within OKFHMN_25985 at 5012.941 kb on - strand, within OKFHMN_25985 at 5012.981 kb on + strand at 5013.022 kb on + strand at 5013.137 kb on + strand, within OKFHMN_25990 at 5013.138 kb on - strand, within OKFHMN_25990 at 5013.140 kb on + strand, within OKFHMN_25990 at 5013.140 kb on + strand, within OKFHMN_25990 at 5013.150 kb on - strand, within OKFHMN_25990 at 5013.166 kb on + strand, within OKFHMN_25990 at 5013.180 kb on + strand, within OKFHMN_25990 at 5013.271 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas58 remove 5,011,248 - -1.7 5,011,278 + +1.0 5,011,324 + OKFHMN_25960 0.31 +0.4 5,011,325 - OKFHMN_25960 0.32 +1.6 5,011,431 - OKFHMN_25960 0.84 -2.1 5,011,663 - OKFHMN_25965 0.42 -1.8 5,012,913 - OKFHMN_25985 0.75 -0.8 5,012,941 - OKFHMN_25985 0.83 +1.6 5,012,981 + +0.1 5,013,022 + +2.6 5,013,137 + OKFHMN_25990 0.57 -0.5 5,013,138 - OKFHMN_25990 0.57 +0.6 5,013,140 + OKFHMN_25990 0.58 +0.2 5,013,140 + OKFHMN_25990 0.58 +0.3 5,013,150 - OKFHMN_25990 0.63 -0.1 5,013,166 + OKFHMN_25990 0.71 -0.3 5,013,180 + OKFHMN_25990 0.78 +0.7 5,013,271 + +0.7
Or see this region's nucleotide sequence