Strain Fitness in Escherichia coli ECRC100 around OKFHMN_25305

Experiment: Bas58

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOKFHMN_25295 and OKFHMN_25300 are separated by 126 nucleotidesOKFHMN_25300 and OKFHMN_25305 are separated by 109 nucleotidesOKFHMN_25305 and OKFHMN_25315 are separated by 186 nucleotidesOKFHMN_25315 and OKFHMN_25320 are separated by 447 nucleotides OKFHMN_25295: OKFHMN_25295 - Prophage protein, at 4,908,740 to 4,909,051 _25295 OKFHMN_25300: OKFHMN_25300 - DUF551 domain-containing protein, at 4,909,178 to 4,909,741 _25300 OKFHMN_25305: OKFHMN_25305 - hypothetical protein, at 4,909,851 to 4,909,955 _25305 OKFHMN_25315: OKFHMN_25315 - protein hokC, at 4,910,142 to 4,910,354 _25315 OKFHMN_25320: OKFHMN_25320 - DUF968 domain-containing protein, at 4,910,802 to 4,911,851 _25320 Position (kb) 4909 4910Strain fitness (log2 ratio) -1 0 1 2at 4909.772 kb on + strandat 4909.772 kb on + strandat 4909.773 kb on - strandat 4909.773 kb on - strandat 4909.776 kb on + strandat 4909.850 kb on + strandat 4909.914 kb on + strand, within OKFHMN_25305at 4910.466 kb on - strandat 4910.900 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas58
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4,909,772 + -0.1
4,909,772 + +1.6
4,909,773 - +2.6
4,909,773 - +0.3
4,909,776 + +0.3
4,909,850 + +1.7
4,909,914 + OKFHMN_25305 0.60 -0.2
4,910,466 - +0.4
4,910,900 - -0.5

Or see this region's nucleotide sequence