Experiment: Bas58
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OKFHMN_25280 and OKFHMN_25285 overlap by 4 nucleotides OKFHMN_25285 and OKFHMN_25290 are separated by 32 nucleotides OKFHMN_25290 and OKFHMN_25295 overlap by 4 nucleotides OKFHMN_25295 and OKFHMN_25300 are separated by 126 nucleotides OKFHMN_25300 and OKFHMN_25305 are separated by 109 nucleotides OKFHMN_25305 and OKFHMN_25315 are separated by 186 nucleotides
OKFHMN_25280: OKFHMN_25280 - hypothetical protein, at 4,907,981 to 4,908,205
_25280
OKFHMN_25285: OKFHMN_25285 - Eae-like protein, at 4,908,202 to 4,908,558
_25285
OKFHMN_25290: OKFHMN_25290 - hypothetical protein, at 4,908,591 to 4,908,743
_25290
OKFHMN_25295: OKFHMN_25295 - Prophage protein, at 4,908,740 to 4,909,051
_25295
OKFHMN_25300: OKFHMN_25300 - DUF551 domain-containing protein, at 4,909,178 to 4,909,741
_25300
OKFHMN_25305: OKFHMN_25305 - hypothetical protein, at 4,909,851 to 4,909,955
_25305
OKFHMN_25315: OKFHMN_25315 - protein hokC, at 4,910,142 to 4,910,354
_25315
Position (kb) 4909
4910 Strain fitness (log2 ratio) -1
0
1
2 at 4908.213 kb on + strand at 4908.260 kb on + strand, within OKFHMN_25285 at 4908.343 kb on - strand, within OKFHMN_25285 at 4908.387 kb on + strand, within OKFHMN_25285 at 4908.392 kb on - strand, within OKFHMN_25285 at 4908.512 kb on + strand, within OKFHMN_25285 at 4908.512 kb on + strand, within OKFHMN_25285 at 4908.512 kb on + strand, within OKFHMN_25285 at 4909.772 kb on + strand at 4909.772 kb on + strand at 4909.773 kb on - strand at 4909.773 kb on - strand at 4909.776 kb on + strand at 4909.850 kb on + strand at 4909.914 kb on + strand, within OKFHMN_25305 at 4910.466 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas58 remove 4,908,213 + +0.2 4,908,260 + OKFHMN_25285 0.16 -1.2 4,908,343 - OKFHMN_25285 0.39 +0.1 4,908,387 + OKFHMN_25285 0.52 -0.0 4,908,392 - OKFHMN_25285 0.53 +1.6 4,908,512 + OKFHMN_25285 0.87 +1.2 4,908,512 + OKFHMN_25285 0.87 -0.8 4,908,512 + OKFHMN_25285 0.87 +0.6 4,909,772 + -0.1 4,909,772 + +1.6 4,909,773 - +2.6 4,909,773 - +0.3 4,909,776 + +0.3 4,909,850 + +1.7 4,909,914 + OKFHMN_25305 0.60 -0.2 4,910,466 - +0.4
Or see this region's nucleotide sequence