Strain Fitness in Escherichia coli ECRC100 around OKFHMN_25200

Experiment: Bas58

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOKFHMN_25195 and OKFHMN_25200 are separated by 13 nucleotidesOKFHMN_25200 and Asn_trna are separated by 123 nucleotidesAsn_trna and mtfA are separated by 100 nucleotides OKFHMN_25195: OKFHMN_25195 - Ig-like domain-containing protein, at 4,889,638 to 4,897,647 _25195 OKFHMN_25200: OKFHMN_25200 - hypothetical protein, at 4,897,661 to 4,897,810 _25200 OKFHMN_25205: Asn_trna - tRNA-Asn(gtt), at 4,897,934 to 4,898,009 _trna OKFHMN_25210: mtfA - DgsA anti-repressor MtfA, at 4,898,110 to 4,898,907 mtfA Position (kb) 4897 4898Strain fitness (log2 ratio) -2 -1 0 1at 4896.694 kb on + strand, within OKFHMN_25195at 4896.694 kb on + strand, within OKFHMN_25195at 4896.695 kb on - strand, within OKFHMN_25195at 4896.793 kb on + strand, within OKFHMN_25195at 4896.931 kb on - strandat 4896.955 kb on - strandat 4897.409 kb on + strandat 4897.520 kb on - strandat 4897.624 kb on + strandat 4897.848 kb on - strandat 4897.856 kb on - strandat 4898.297 kb on + strand, within mtfAat 4898.297 kb on + strand, within mtfAat 4898.695 kb on + strand, within mtfA

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas58
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4,896,694 + OKFHMN_25195 0.88 -1.4
4,896,694 + OKFHMN_25195 0.88 -1.6
4,896,695 - OKFHMN_25195 0.88 -0.1
4,896,793 + OKFHMN_25195 0.89 -1.8
4,896,931 - +0.4
4,896,955 - +0.6
4,897,409 + +0.8
4,897,520 - -0.0
4,897,624 + +0.6
4,897,848 - +0.3
4,897,856 - +0.5
4,898,297 + mtfA OKFHMN_25210 0.23 +1.6
4,898,297 + mtfA OKFHMN_25210 0.23 -1.4
4,898,695 + mtfA OKFHMN_25210 0.73 +1.2

Or see this region's nucleotide sequence