Experiment: Bas58
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt nuoG and nuoH overlap by 4 nucleotides nuoH and nuoI are separated by 14 nucleotides nuoI and nuoJ are separated by 11 nucleotides
OKFHMN_22865: nuoG - NADH-quinone oxidoreductase subunit NuoG, at 4,448,334 to 4,451,060
nuoG
OKFHMN_22870: nuoH - NADH-quinone oxidoreductase subunit NuoH, at 4,451,057 to 4,452,034
nuoH
OKFHMN_22875: nuoI - NADH-quinone oxidoreductase subunit NuoI, at 4,452,049 to 4,452,591
nuoI
OKFHMN_22880: nuoJ - NADH-quinone oxidoreductase subunit J, at 4,452,603 to 4,453,157
nuoJ
Position (kb)
4451
4452
4453 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4450.089 kb on - strand, within nuoG at 4450.193 kb on - strand, within nuoG at 4450.196 kb on + strand, within nuoG at 4450.199 kb on + strand, within nuoG at 4450.233 kb on + strand, within nuoG at 4450.245 kb on + strand, within nuoG at 4450.248 kb on + strand, within nuoG at 4450.348 kb on + strand, within nuoG at 4450.348 kb on + strand, within nuoG at 4450.389 kb on - strand, within nuoG at 4450.717 kb on - strand, within nuoG at 4450.779 kb on + strand, within nuoG at 4450.779 kb on + strand, within nuoG at 4450.913 kb on + strand at 4450.914 kb on - strand at 4450.918 kb on - strand at 4451.203 kb on + strand, within nuoH at 4451.264 kb on - strand, within nuoH at 4451.467 kb on + strand, within nuoH at 4451.467 kb on + strand, within nuoH at 4451.467 kb on + strand, within nuoH at 4451.780 kb on + strand, within nuoH at 4452.093 kb on + strand at 4452.094 kb on - strand at 4452.096 kb on + strand at 4452.190 kb on - strand, within nuoI at 4452.422 kb on - strand, within nuoI at 4452.490 kb on + strand, within nuoI at 4452.493 kb on - strand, within nuoI at 4452.621 kb on - strand at 4452.621 kb on - strand at 4452.640 kb on + strand at 4452.640 kb on + strand at 4452.641 kb on - strand at 4452.641 kb on - strand at 4452.693 kb on + strand, within nuoJ at 4452.748 kb on - strand, within nuoJ at 4452.995 kb on + strand, within nuoJ at 4452.996 kb on - strand, within nuoJ at 4453.015 kb on + strand, within nuoJ
Per-strain Table
Position Strand Gene LocusTag Fraction Bas58 remove 4,450,089 - nuoG OKFHMN_22865 0.64 +2.6 4,450,193 - nuoG OKFHMN_22865 0.68 +0.0 4,450,196 + nuoG OKFHMN_22865 0.68 -2.0 4,450,199 + nuoG OKFHMN_22865 0.68 +1.2 4,450,233 + nuoG OKFHMN_22865 0.70 +0.6 4,450,245 + nuoG OKFHMN_22865 0.70 -0.7 4,450,248 + nuoG OKFHMN_22865 0.70 +1.0 4,450,348 + nuoG OKFHMN_22865 0.74 -1.0 4,450,348 + nuoG OKFHMN_22865 0.74 +0.0 4,450,389 - nuoG OKFHMN_22865 0.75 +1.6 4,450,717 - nuoG OKFHMN_22865 0.87 +0.6 4,450,779 + nuoG OKFHMN_22865 0.90 +0.6 4,450,779 + nuoG OKFHMN_22865 0.90 -0.4 4,450,913 + +0.3 4,450,914 - +0.0 4,450,918 - +1.6 4,451,203 + nuoH OKFHMN_22870 0.15 +0.6 4,451,264 - nuoH OKFHMN_22870 0.21 -0.2 4,451,467 + nuoH OKFHMN_22870 0.42 -0.4 4,451,467 + nuoH OKFHMN_22870 0.42 +1.2 4,451,467 + nuoH OKFHMN_22870 0.42 -0.4 4,451,780 + nuoH OKFHMN_22870 0.74 +2.6 4,452,093 + -2.2 4,452,094 - +1.6 4,452,096 + -0.8 4,452,190 - nuoI OKFHMN_22875 0.26 +1.6 4,452,422 - nuoI OKFHMN_22875 0.69 -1.0 4,452,490 + nuoI OKFHMN_22875 0.81 -1.4 4,452,493 - nuoI OKFHMN_22875 0.82 +1.6 4,452,621 - +1.6 4,452,621 - -0.5 4,452,640 + +1.6 4,452,640 + -0.3 4,452,641 - -0.5 4,452,641 - +0.6 4,452,693 + nuoJ OKFHMN_22880 0.16 +1.0 4,452,748 - nuoJ OKFHMN_22880 0.26 -0.1 4,452,995 + nuoJ OKFHMN_22880 0.71 -0.4 4,452,996 - nuoJ OKFHMN_22880 0.71 +0.5 4,453,015 + nuoJ OKFHMN_22880 0.74 +0.0
Or see this region's nucleotide sequence