Strain Fitness in Escherichia coli ECRC100 around OKFHMN_22870

Experiment: Bas58

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntnuoG and nuoH overlap by 4 nucleotidesnuoH and nuoI are separated by 14 nucleotidesnuoI and nuoJ are separated by 11 nucleotides OKFHMN_22865: nuoG - NADH-quinone oxidoreductase subunit NuoG, at 4,448,334 to 4,451,060 nuoG OKFHMN_22870: nuoH - NADH-quinone oxidoreductase subunit NuoH, at 4,451,057 to 4,452,034 nuoH OKFHMN_22875: nuoI - NADH-quinone oxidoreductase subunit NuoI, at 4,452,049 to 4,452,591 nuoI OKFHMN_22880: nuoJ - NADH-quinone oxidoreductase subunit J, at 4,452,603 to 4,453,157 nuoJ Position (kb) 4451 4452 4453Strain fitness (log2 ratio) -2 -1 0 1 2at 4450.089 kb on - strand, within nuoGat 4450.193 kb on - strand, within nuoGat 4450.196 kb on + strand, within nuoGat 4450.199 kb on + strand, within nuoGat 4450.233 kb on + strand, within nuoGat 4450.245 kb on + strand, within nuoGat 4450.248 kb on + strand, within nuoGat 4450.348 kb on + strand, within nuoGat 4450.348 kb on + strand, within nuoGat 4450.389 kb on - strand, within nuoGat 4450.717 kb on - strand, within nuoGat 4450.779 kb on + strand, within nuoGat 4450.779 kb on + strand, within nuoGat 4450.913 kb on + strandat 4450.914 kb on - strandat 4450.918 kb on - strandat 4451.203 kb on + strand, within nuoHat 4451.264 kb on - strand, within nuoHat 4451.467 kb on + strand, within nuoHat 4451.467 kb on + strand, within nuoHat 4451.467 kb on + strand, within nuoHat 4451.780 kb on + strand, within nuoHat 4452.093 kb on + strandat 4452.094 kb on - strandat 4452.096 kb on + strandat 4452.190 kb on - strand, within nuoIat 4452.422 kb on - strand, within nuoIat 4452.490 kb on + strand, within nuoIat 4452.493 kb on - strand, within nuoIat 4452.621 kb on - strandat 4452.621 kb on - strandat 4452.640 kb on + strandat 4452.640 kb on + strandat 4452.641 kb on - strandat 4452.641 kb on - strandat 4452.693 kb on + strand, within nuoJat 4452.748 kb on - strand, within nuoJat 4452.995 kb on + strand, within nuoJat 4452.996 kb on - strand, within nuoJat 4453.015 kb on + strand, within nuoJ

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas58
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4,450,089 - nuoG OKFHMN_22865 0.64 +2.6
4,450,193 - nuoG OKFHMN_22865 0.68 +0.0
4,450,196 + nuoG OKFHMN_22865 0.68 -2.0
4,450,199 + nuoG OKFHMN_22865 0.68 +1.2
4,450,233 + nuoG OKFHMN_22865 0.70 +0.6
4,450,245 + nuoG OKFHMN_22865 0.70 -0.7
4,450,248 + nuoG OKFHMN_22865 0.70 +1.0
4,450,348 + nuoG OKFHMN_22865 0.74 -1.0
4,450,348 + nuoG OKFHMN_22865 0.74 +0.0
4,450,389 - nuoG OKFHMN_22865 0.75 +1.6
4,450,717 - nuoG OKFHMN_22865 0.87 +0.6
4,450,779 + nuoG OKFHMN_22865 0.90 +0.6
4,450,779 + nuoG OKFHMN_22865 0.90 -0.4
4,450,913 + +0.3
4,450,914 - +0.0
4,450,918 - +1.6
4,451,203 + nuoH OKFHMN_22870 0.15 +0.6
4,451,264 - nuoH OKFHMN_22870 0.21 -0.2
4,451,467 + nuoH OKFHMN_22870 0.42 -0.4
4,451,467 + nuoH OKFHMN_22870 0.42 +1.2
4,451,467 + nuoH OKFHMN_22870 0.42 -0.4
4,451,780 + nuoH OKFHMN_22870 0.74 +2.6
4,452,093 + -2.2
4,452,094 - +1.6
4,452,096 + -0.8
4,452,190 - nuoI OKFHMN_22875 0.26 +1.6
4,452,422 - nuoI OKFHMN_22875 0.69 -1.0
4,452,490 + nuoI OKFHMN_22875 0.81 -1.4
4,452,493 - nuoI OKFHMN_22875 0.82 +1.6
4,452,621 - +1.6
4,452,621 - -0.5
4,452,640 + +1.6
4,452,640 + -0.3
4,452,641 - -0.5
4,452,641 - +0.6
4,452,693 + nuoJ OKFHMN_22880 0.16 +1.0
4,452,748 - nuoJ OKFHMN_22880 0.26 -0.1
4,452,995 + nuoJ OKFHMN_22880 0.71 -0.4
4,452,996 - nuoJ OKFHMN_22880 0.71 +0.5
4,453,015 + nuoJ OKFHMN_22880 0.74 +0.0

Or see this region's nucleotide sequence