Strain Fitness in Escherichia coli ECRC100 around OKFHMN_19880

Experiment: Bas58

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOKFHMN_19875 and OKFHMN_19880 are separated by 429 nucleotidesOKFHMN_19880 and yqeL overlap by 25 nucleotidesyqeL and yqeJ are separated by 32 nucleotidesyqeJ and yqeI overlap by 4 nucleotides OKFHMN_19875: OKFHMN_19875 - Putative uncharacterized protein YgeF, at 3,862,707 to 3,863,198 _19875 OKFHMN_19880: OKFHMN_19880 - Uncharacterized protein YqeK, at 3,863,628 to 3,864,053 _19880 OKFHMN_19885: yqeL - Uncharacterized protein YqeL, at 3,864,029 to 3,864,169 yqeL OKFHMN_19890: yqeJ - Uncharacterized protein YqeJ, at 3,864,202 to 3,864,681 yqeJ OKFHMN_19895: yqeI - Uncharacterized protein YqeI, at 3,864,678 to 3,865,487 yqeI Position (kb) 3863 3864 3865Strain fitness (log2 ratio) -2 -1 0 1 2at 3862.714 kb on - strandat 3862.854 kb on - strand, within OKFHMN_19875at 3863.261 kb on - strandat 3863.286 kb on - strandat 3863.392 kb on + strandat 3863.622 kb on + strandat 3863.666 kb on + strandat 3863.839 kb on - strand, within OKFHMN_19880

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas58
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3,862,714 - +2.6
3,862,854 - OKFHMN_19875 0.30 -0.3
3,863,261 - +0.7
3,863,286 - +0.2
3,863,392 + -2.2
3,863,622 + +0.4
3,863,666 + -0.5
3,863,839 - OKFHMN_19880 0.50 +0.9

Or see this region's nucleotide sequence