Strain Fitness in Escherichia coli ECRC100 around OKFHMN_17250

Experiment: Bas58

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Bas58
3,369,074	-				-0.3
3,369,190	-				+0.1
3,369,190	-				-1.1
3,369,190	-				+0.8
3,369,209	-				-0.1
3,369,209	-				+0.6
3,369,209	-				-0.3
3,369,212	-				-0.4
3,369,217	-				+0.1
3,369,234	-				-0.4
3,369,239	-				-0.0
3,369,314	-				+0.5
3,369,319	+				-0.8
3,369,320	-				+0.1
3,369,350	-				+0.5
3,369,559	+	yhfA	OKFHMN_17245	0.50	-0.4
3,369,611	+	yhfA	OKFHMN_17245	0.63	+0.5
3,369,742	-				+0.7
3,369,742	-				-0.8
3,369,764	+				+0.3
3,369,765	-				+0.1
3,369,765	-				-0.6
3,369,765	-				+0.3
3,369,792	-				+0.1
3,369,808	+				+0.5
3,369,809	-				+0.5
3,369,809	-				+0.1
3,369,863	+				-0.0
3,369,863	+				-1.6
3,369,864	-				-0.1
3,369,864	-				-0.1
3,369,912	-	prkB	OKFHMN_17250	0.11	+0.3
3,369,912	-	prkB	OKFHMN_17250	0.11	-0.0
3,370,109	-	prkB	OKFHMN_17250	0.34	+0.1
3,370,109	-	prkB	OKFHMN_17250	0.34	+0.9
3,370,109	-	prkB	OKFHMN_17250	0.34	+0.2
3,370,109	-	prkB	OKFHMN_17250	0.34	+0.2
3,370,115	+	prkB	OKFHMN_17250	0.34	+0.4
3,370,115	+	prkB	OKFHMN_17250	0.34	+1.0
3,370,116	-	prkB	OKFHMN_17250	0.34	-0.3
3,370,117	+	prkB	OKFHMN_17250	0.35	-1.9
3,370,118	-	prkB	OKFHMN_17250	0.35	+1.1
3,370,118	-	prkB	OKFHMN_17250	0.35	-0.8
3,370,118	-	prkB	OKFHMN_17250	0.35	+0.5
3,370,137	+	prkB	OKFHMN_17250	0.37	+0.9
3,370,220	+	prkB	OKFHMN_17250	0.46	+1.0
3,370,220	+	prkB	OKFHMN_17250	0.46	+0.3
3,370,221	-	prkB	OKFHMN_17250	0.47	+0.3
3,370,221	-	prkB	OKFHMN_17250	0.47	-0.1
3,370,225	-	prkB	OKFHMN_17250	0.47	-0.5
3,370,262	+	prkB	OKFHMN_17250	0.51	-0.1
3,370,263	-	prkB	OKFHMN_17250	0.51	-0.2
3,370,290	+	prkB	OKFHMN_17250	0.54	-0.1
3,370,291	-	prkB	OKFHMN_17250	0.55	-0.3
3,370,300	+	prkB	OKFHMN_17250	0.56	-0.1
3,370,301	-	prkB	OKFHMN_17250	0.56	-0.2
3,370,301	-	prkB	OKFHMN_17250	0.56	-0.4
3,370,327	-	prkB	OKFHMN_17250	0.59	+0.0
3,370,384	+	prkB	OKFHMN_17250	0.65	+0.2
3,370,385	-	prkB	OKFHMN_17250	0.65	-0.1
3,370,385	-	prkB	OKFHMN_17250	0.65	+0.0
3,370,388	+	prkB	OKFHMN_17250	0.66	-0.2
3,370,389	-	prkB	OKFHMN_17250	0.66	+0.2
3,370,429	+	prkB	OKFHMN_17250	0.70	-0.2
3,370,430	-	prkB	OKFHMN_17250	0.71	-0.5
3,370,491	-	prkB	OKFHMN_17250	0.78	+0.7
3,370,546	+	prkB	OKFHMN_17250	0.84	-0.5
3,370,685	+				+0.2
3,370,685	+				+0.4
3,370,686	-				-0.6
3,370,686	-				+0.8
3,370,701	+				-0.7
3,370,701	+				-0.5
3,370,702	-				-0.2
3,370,702	-				-1.0
3,370,702	-				+0.8
3,370,702	-				-1.9
3,370,706	-				-0.0
3,370,711	+				-0.3
3,370,715	-				-0.5
3,370,769	-	yheU	OKFHMN_17255	0.14	-0.3
3,370,797	-	yheU	OKFHMN_17255	0.26	+0.5
3,370,858	+	yheU	OKFHMN_17255	0.54	-0.4
3,370,858	+	yheU	OKFHMN_17255	0.54	-0.3
3,370,893	-	yheU	OKFHMN_17255	0.70	-1.3
3,370,893	-	yheU	OKFHMN_17255	0.70	+0.2
3,370,981	+				+0.7
3,371,026	+				+0.2
3,371,026	+				+0.2
3,371,027	-				-0.5
3,371,027	-				-0.3
3,371,032	-				-0.2
3,371,075	+	yheT	OKFHMN_17260	0.12	+0.4
3,371,207	+	yheT	OKFHMN_17260	0.25	-1.4
3,371,228	+	yheT	OKFHMN_17260	0.27	+0.0
3,371,229	-	yheT	OKFHMN_17260	0.27	+1.0
3,371,370	-	yheT	OKFHMN_17260	0.41	-0.2
3,371,379	-	yheT	OKFHMN_17260	0.42	+0.2
3,371,408	+	yheT	OKFHMN_17260	0.45	-0.5
3,371,408	+	yheT	OKFHMN_17260	0.45	+0.5
3,371,409	-	yheT	OKFHMN_17260	0.45	-1.5
3,371,409	-	yheT	OKFHMN_17260	0.45	+0.9
3,371,409	-	yheT	OKFHMN_17260	0.45	-1.0
3,371,409	-	yheT	OKFHMN_17260	0.45	-0.3
3,371,412	+	yheT	OKFHMN_17260	0.45	-0.2
3,371,412	+	yheT	OKFHMN_17260	0.45	+0.0
3,371,413	-	yheT	OKFHMN_17260	0.45	+0.5
3,371,413	-	yheT	OKFHMN_17260	0.45	-0.1
3,371,502	+	yheT	OKFHMN_17260	0.54	-0.1
3,371,503	-	yheT	OKFHMN_17260	0.54	-1.1
3,371,503	-	yheT	OKFHMN_17260	0.54	-1.0
3,371,570	-	yheT	OKFHMN_17260	0.61	-0.3
3,371,619	+	yheT	OKFHMN_17260	0.65	+0.1
3,371,619	+	yheT	OKFHMN_17260	0.65	+0.2