Strain Fitness in Escherichia coli ECRC100 around OKFHMN_16070

Experiment: Bas58

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Bas58
3,118,534	+	fimD	OKFHMN_16065	0.17	-0.1
3,118,534	+	fimD	OKFHMN_16065	0.17	-0.4
3,118,535	-	fimD	OKFHMN_16065	0.17	-0.8
3,118,535	-	fimD	OKFHMN_16065	0.17	+0.3
3,118,791	-	fimD	OKFHMN_16065	0.41	-0.4
3,118,793	+	fimD	OKFHMN_16065	0.41	-0.3
3,118,863	+	fimD	OKFHMN_16065	0.47	+0.3
3,118,885	+	fimD	OKFHMN_16065	0.49	+0.5
3,118,912	+	fimD	OKFHMN_16065	0.52	-0.2
3,118,939	+	fimD	OKFHMN_16065	0.54	-0.1
3,118,939	+	fimD	OKFHMN_16065	0.54	-0.4
3,118,940	-	fimD	OKFHMN_16065	0.54	+1.4
3,118,940	-	fimD	OKFHMN_16065	0.54	+0.5
3,118,951	-	fimD	OKFHMN_16065	0.55	+0.5
3,118,984	-	fimD	OKFHMN_16065	0.58	+2.1
3,118,989	-	fimD	OKFHMN_16065	0.59	+1.7
3,119,002	+	fimD	OKFHMN_16065	0.60	-0.0
3,119,002	+	fimD	OKFHMN_16065	0.60	-1.4
3,119,002	+	fimD	OKFHMN_16065	0.60	+0.9
3,119,003	-	fimD	OKFHMN_16065	0.60	-0.0
3,119,005	+	fimD	OKFHMN_16065	0.60	-0.1
3,119,005	+	fimD	OKFHMN_16065	0.60	+0.1
3,119,006	-	fimD	OKFHMN_16065	0.60	+0.0
3,119,016	-	fimD	OKFHMN_16065	0.61	+0.7
3,119,016	-	fimD	OKFHMN_16065	0.61	+0.4
3,119,056	+	fimD	OKFHMN_16065	0.65	-0.6
3,119,056	+	fimD	OKFHMN_16065	0.65	-0.7
3,119,057	-	fimD	OKFHMN_16065	0.65	+1.1
3,119,057	-	fimD	OKFHMN_16065	0.65	-0.0
3,119,147	+	fimD	OKFHMN_16065	0.73	-0.0
3,119,148	-	fimD	OKFHMN_16065	0.73	+0.1
3,119,214	-	fimD	OKFHMN_16065	0.79	+0.0
3,119,318	-	fimD	OKFHMN_16065	0.88	+0.1
3,119,322	+	fimD	OKFHMN_16065	0.89	-1.1
3,119,335	+				-0.9
3,119,335	+				-0.1
3,119,335	+				+0.9
3,119,336	-				+0.3
3,119,406	+				+1.1
3,119,410	-				-0.7
3,119,439	+				+0.5
3,119,440	-				-1.0
3,119,492	-				+0.5
3,119,492	-				+0.6
3,119,493	+				+0.0
3,119,493	+				+0.1
3,119,528	-				-2.1
3,119,570	-				-0.8
3,119,607	-	lpfC	OKFHMN_16070	0.10	+0.2
3,119,634	+	lpfC	OKFHMN_16070	0.12	-0.6
3,119,634	+	lpfC	OKFHMN_16070	0.12	-1.4
3,119,634	+	lpfC	OKFHMN_16070	0.12	-0.3
3,119,635	-	lpfC	OKFHMN_16070	0.12	+0.7
3,119,698	-	lpfC	OKFHMN_16070	0.16	-1.3
3,119,713	-	lpfC	OKFHMN_16070	0.17	-0.3
3,119,750	+	lpfC	OKFHMN_16070	0.20	-0.2
3,119,751	-	lpfC	OKFHMN_16070	0.20	+0.1
3,119,752	+	lpfC	OKFHMN_16070	0.20	+0.7
3,119,753	-	lpfC	OKFHMN_16070	0.20	-1.2
3,119,803	+	lpfC	OKFHMN_16070	0.24	-0.6
3,119,808	+	lpfC	OKFHMN_16070	0.24	+0.2
3,119,809	-	lpfC	OKFHMN_16070	0.24	-0.1
3,119,821	+	lpfC	OKFHMN_16070	0.25	-0.1
3,119,821	+	lpfC	OKFHMN_16070	0.25	+0.7
3,119,822	-	lpfC	OKFHMN_16070	0.25	-0.6
3,119,823	+	lpfC	OKFHMN_16070	0.25	+0.1
3,119,869	+	lpfC	OKFHMN_16070	0.28	+0.5
3,119,871	+	lpfC	OKFHMN_16070	0.28	+1.5
3,119,872	-	lpfC	OKFHMN_16070	0.28	-0.6
3,119,921	+	lpfC	OKFHMN_16070	0.32	-1.2
3,119,930	-	lpfC	OKFHMN_16070	0.32	-0.1
3,120,034	+	lpfC	OKFHMN_16070	0.40	+1.1
3,120,040	-	lpfC	OKFHMN_16070	0.40	-0.1
3,120,046	+	lpfC	OKFHMN_16070	0.40	-0.1
3,120,046	+	lpfC	OKFHMN_16070	0.40	+0.1
3,120,046	+	lpfC	OKFHMN_16070	0.40	+0.5
3,120,047	-	lpfC	OKFHMN_16070	0.40	+0.5
3,120,047	-	lpfC	OKFHMN_16070	0.40	-0.6
3,120,047	-	lpfC	OKFHMN_16070	0.40	-0.6
3,120,048	+	lpfC	OKFHMN_16070	0.40	+0.7
3,120,049	-	lpfC	OKFHMN_16070	0.41	+2.1
3,120,057	+	lpfC	OKFHMN_16070	0.41	+0.3
3,120,132	+	lpfC	OKFHMN_16070	0.46	-0.8
3,120,133	-	lpfC	OKFHMN_16070	0.46	+0.2
3,120,133	-	lpfC	OKFHMN_16070	0.46	+0.1
3,120,133	-	lpfC	OKFHMN_16070	0.46	+0.4
3,120,137	-	lpfC	OKFHMN_16070	0.47	-0.2
3,120,165	+	lpfC	OKFHMN_16070	0.48	+0.6
3,120,221	-	lpfC	OKFHMN_16070	0.52	-0.3
3,120,311	+	lpfC	OKFHMN_16070	0.59	-0.7
3,120,312	-	lpfC	OKFHMN_16070	0.59	+0.6
3,120,316	+	lpfC	OKFHMN_16070	0.59	+0.6
3,120,322	+	lpfC	OKFHMN_16070	0.59	+1.1
3,120,372	-	lpfC	OKFHMN_16070	0.63	+0.4
3,120,372	-	lpfC	OKFHMN_16070	0.63	-0.4
3,120,662	+	lpfC	OKFHMN_16070	0.83	-0.3
3,120,663	-	lpfC	OKFHMN_16070	0.83	+0.1
3,120,720	-	lpfC	OKFHMN_16070	0.87	-0.5
3,120,751	-	lpfC	OKFHMN_16070	0.89	-0.2
3,120,775	+				+0.5
3,120,775	+				-0.1
3,120,776	-				-0.8
3,120,778	-				+0.5
3,120,778	-				+1.7
3,120,814	-				+0.2
3,120,854	-				+0.3
3,120,855	+				+0.4
3,120,855	+				+0.1
3,120,855	+				+0.7
3,120,856	-				-0.7
3,120,856	-				+0.6
3,120,856	-				-0.4
3,120,856	-				-0.2
3,120,888	+				-1.1
3,120,943	+				-0.2
3,120,944	-				+0.7
3,120,959	-				+1.4
3,120,959	-				+1.2
3,120,959	-				-0.9
3,121,016	+				-0.5
3,121,016	+				+0.1
3,121,016	+				-0.2
3,121,038	+	lpfD	OKFHMN_16075	0.10	+0.8
3,121,039	-	lpfD	OKFHMN_16075	0.10	+1.0
3,121,039	-	lpfD	OKFHMN_16075	0.10	+1.1
3,121,039	-	lpfD	OKFHMN_16075	0.10	-0.0
3,121,039	-	lpfD	OKFHMN_16075	0.10	+0.2
3,121,044	+	lpfD	OKFHMN_16075	0.11	+0.3
3,121,044	+	lpfD	OKFHMN_16075	0.11	+0.4
3,121,045	-	lpfD	OKFHMN_16075	0.11	+0.5
3,121,046	+	lpfD	OKFHMN_16075	0.11	+0.2
3,121,046	+	lpfD	OKFHMN_16075	0.11	-0.8
3,121,047	-	lpfD	OKFHMN_16075	0.11	-0.2
3,121,047	-	lpfD	OKFHMN_16075	0.11	-0.9
3,121,069	+	lpfD	OKFHMN_16075	0.13	+0.4
3,121,070	-	lpfD	OKFHMN_16075	0.13	-0.3
3,121,070	-	lpfD	OKFHMN_16075	0.13	+0.5
3,121,105	+	lpfD	OKFHMN_16075	0.17	-0.1
3,121,118	+	lpfD	OKFHMN_16075	0.18	-0.1
3,121,141	+	lpfD	OKFHMN_16075	0.20	+0.1
3,121,148	-	lpfD	OKFHMN_16075	0.21	+0.7
3,121,171	-	lpfD	OKFHMN_16075	0.23	+0.6
3,121,172	+	lpfD	OKFHMN_16075	0.23	-0.4
3,121,188	-	lpfD	OKFHMN_16075	0.24	+0.6
3,121,192	+	lpfD	OKFHMN_16075	0.25	+0.2
3,121,192	+	lpfD	OKFHMN_16075	0.25	+0.0
3,121,192	+	lpfD	OKFHMN_16075	0.25	-0.5
3,121,193	-	lpfD	OKFHMN_16075	0.25	+1.3
3,121,193	-	lpfD	OKFHMN_16075	0.25	+0.3
3,121,248	+	lpfD	OKFHMN_16075	0.30	-0.3
3,121,249	-	lpfD	OKFHMN_16075	0.30	-0.3
3,121,253	+	lpfD	OKFHMN_16075	0.31	-0.3
3,121,298	+	lpfD	OKFHMN_16075	0.35	+0.4
3,121,370	+	lpfD	OKFHMN_16075	0.42	-0.1
3,121,380	+	lpfD	OKFHMN_16075	0.43	+0.1
3,121,415	+	lpfD	OKFHMN_16075	0.46	+0.2
3,121,415	+	lpfD	OKFHMN_16075	0.46	+0.2
3,121,419	-	lpfD	OKFHMN_16075	0.46	-0.6
3,121,457	-	lpfD	OKFHMN_16075	0.50	+0.0
3,121,471	-	lpfD	OKFHMN_16075	0.51	-0.2
3,121,504	+	lpfD	OKFHMN_16075	0.54	-0.3
3,121,504	+	lpfD	OKFHMN_16075	0.54	-1.3
3,121,510	+	lpfD	OKFHMN_16075	0.55	-0.1
3,121,688	+	lpfD	OKFHMN_16075	0.72	-0.3
3,121,688	+	lpfD	OKFHMN_16075	0.72	-0.2
3,121,688	+	lpfD	OKFHMN_16075	0.72	-0.3
3,121,688	+	lpfD	OKFHMN_16075	0.72	-0.5
3,121,689	-	lpfD	OKFHMN_16075	0.72	+0.3
3,121,761	-	lpfD	OKFHMN_16075	0.79	-2.3
3,121,844	-	lpfD	OKFHMN_16075	0.87	-0.1