Strain Fitness in Escherichia coli ECRC100 around OKFHMN_10940

Experiment: Bas58

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Bas58
2,063,840	-	caiE	OKFHMN_10925	0.75	-0.6
2,063,868	+	caiE	OKFHMN_10925	0.80	+0.5
2,063,902	+	caiE	OKFHMN_10925	0.86	+0.0
2,063,903	-	caiE	OKFHMN_10925	0.86	-0.5
2,064,115	-				-0.6
2,064,181	-	caiF	OKFHMN_10930	0.20	-0.9
2,064,196	+	caiF	OKFHMN_10930	0.23	-0.1
2,064,307	-	caiF	OKFHMN_10930	0.52	-0.1
2,064,309	+	caiF	OKFHMN_10930	0.52	+0.0
2,064,310	-	caiF	OKFHMN_10930	0.52	+0.3
2,064,334	+	caiF	OKFHMN_10930	0.58	+0.6
2,064,358	-	caiF	OKFHMN_10930	0.64	+0.2
2,064,421	+	caiF	OKFHMN_10930	0.80	-0.3
2,064,591	+		OKFHMN_10935	0.26	-0.1
2,064,592	-		OKFHMN_10935	0.27	-0.0
2,064,632	+		OKFHMN_10935	0.45	+0.2
2,064,632	+		OKFHMN_10935	0.45	+0.3
2,064,632	+		OKFHMN_10935	0.45	+0.1
2,064,632	+		OKFHMN_10935	0.45	-1.6
2,064,633	-		OKFHMN_10935	0.46	+0.7
2,064,633	-		OKFHMN_10935	0.46	+1.5
2,064,706	+		OKFHMN_10935	0.79	-0.4
2,064,706	+		OKFHMN_10935	0.79	+1.3
2,064,709	+		OKFHMN_10935	0.80	-0.1
2,064,710	-		OKFHMN_10935	0.81	-0.5
2,064,757	+				-0.1
2,064,760	+				+0.5
2,064,760	+				+1.1
2,064,761	-				-0.1
2,064,863	-				-0.7
2,064,863	-				-0.7
2,064,872	+				+1.9
2,064,872	+				+0.1
2,064,872	+				-0.4
2,064,872	+				-0.1
2,064,873	-				+0.1
2,064,874	+				+0.2
2,064,946	+				-0.4
2,064,947	-				+0.5
2,064,947	-				-0.6
2,064,947	-				+1.9
2,064,950	+				+0.9
2,064,968	+				-0.1
2,065,436	+	carB	OKFHMN_10940	0.21	+1.2
2,065,468	+	carB	OKFHMN_10940	0.22	+0.1
2,065,557	+	carB	OKFHMN_10940	0.25	+0.4
2,065,557	+	carB	OKFHMN_10940	0.25	-0.7
2,065,558	-	carB	OKFHMN_10940	0.25	-0.3
2,065,558	-	carB	OKFHMN_10940	0.25	+0.3
2,065,578	+	carB	OKFHMN_10940	0.25	+0.2
2,065,579	-	carB	OKFHMN_10940	0.25	+0.2
2,065,586	-	carB	OKFHMN_10940	0.26	-0.8
2,065,586	-	carB	OKFHMN_10940	0.26	+0.0
2,065,701	+	carB	OKFHMN_10940	0.29	+0.6
2,065,828	+	carB	OKFHMN_10940	0.33	-1.5
2,065,895	+	carB	OKFHMN_10940	0.35	-0.4
2,066,056	+	carB	OKFHMN_10940	0.40	+0.9
2,066,183	+	carB	OKFHMN_10940	0.44	-0.2
2,066,190	-	carB	OKFHMN_10940	0.44	-0.1
2,066,242	+	carB	OKFHMN_10940	0.46	+0.3
2,066,243	-	carB	OKFHMN_10940	0.46	-0.6
2,066,341	+	carB	OKFHMN_10940	0.49	-0.3
2,066,342	-	carB	OKFHMN_10940	0.49	-0.3
2,066,350	+	carB	OKFHMN_10940	0.49	+0.7
2,066,350	+	carB	OKFHMN_10940	0.49	-0.1
2,066,351	-	carB	OKFHMN_10940	0.49	-0.1
2,066,356	+	carB	OKFHMN_10940	0.50	-0.7
2,066,422	+	carB	OKFHMN_10940	0.52	+1.2
2,066,423	-	carB	OKFHMN_10940	0.52	+0.1
2,066,589	+	carB	OKFHMN_10940	0.57	+0.4
2,066,669	-	carB	OKFHMN_10940	0.59	+0.3
2,066,675	+	carB	OKFHMN_10940	0.59	-1.2
2,066,676	-	carB	OKFHMN_10940	0.59	+0.3
2,066,676	-	carB	OKFHMN_10940	0.59	-0.1
2,066,676	-	carB	OKFHMN_10940	0.59	-1.5
2,066,993	-	carB	OKFHMN_10940	0.69	+0.2
2,067,133	+	carB	OKFHMN_10940	0.74	-0.4
2,067,433	+	carB	OKFHMN_10940	0.83	-0.9
2,067,530	+	carB	OKFHMN_10940	0.86	-0.2
2,067,530	+	carB	OKFHMN_10940	0.86	-0.9
2,067,531	-	carB	OKFHMN_10940	0.86	+0.3
2,067,579	+	carB	OKFHMN_10940	0.88	+0.6
2,067,755	+				-0.6
2,067,756	-				-0.3
2,067,760	-				-0.5
2,067,787	+				-0.3
2,067,878	+				-0.5
2,067,968	+				-0.1
2,067,969	-				-0.5
2,067,989	+				+1.9
2,067,990	-				-0.2
2,067,990	-				-0.3
2,068,000	-				-0.2
2,068,004	-				+1.6
2,068,012	+				-0.4
2,068,136	+	carA	OKFHMN_10945	0.12	-0.2
2,068,159	+	carA	OKFHMN_10945	0.14	+0.4
2,068,159	+	carA	OKFHMN_10945	0.14	+1.2
2,068,184	+	carA	OKFHMN_10945	0.16	-0.1
2,068,184	+	carA	OKFHMN_10945	0.16	-0.9
2,068,185	-	carA	OKFHMN_10945	0.16	-0.4
2,068,398	+	carA	OKFHMN_10945	0.35	-0.8
2,068,557	+	carA	OKFHMN_10945	0.49	+0.7
2,068,831	+	carA	OKFHMN_10945	0.72	-1.1
2,068,832	-	carA	OKFHMN_10945	0.73	-0.2
2,068,867	+	carA	OKFHMN_10945	0.76	-1.0
2,068,868	-	carA	OKFHMN_10945	0.76	+0.4
2,068,923	-	carA	OKFHMN_10945	0.81	+0.1
2,068,977	+	carA	OKFHMN_10945	0.85	+0.4
2,068,978	-	carA	OKFHMN_10945	0.85	+0.3