Strain Fitness in Escherichia coli ECRC100 around OKFHMN_09960

Experiment: Bas58

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOKFHMN_09955 and Asp_trna are separated by 328 nucleotidesAsp_trna and dnaQ are separated by 132 nucleotidesdnaQ and rnhA are separated by 55 nucleotides OKFHMN_09955: OKFHMN_09955 - Uncharacterized lipoprotein YafT, at 1,861,506 to 1,862,306 _09955 OKFHMN_09960: Asp_trna - tRNA-Asp(gtc), at 1,862,635 to 1,862,711 _trna OKFHMN_09965: dnaQ - DNA polymerase III subunit epsilon, at 1,862,844 to 1,863,584 dnaQ OKFHMN_09970: rnhA - ribonuclease HI, at 1,863,640 to 1,864,107 rnhA Position (kb) 1862 1863Strain fitness (log2 ratio) -1 0 1at 1861.774 kb on - strand, within OKFHMN_09955at 1861.799 kb on - strand, within OKFHMN_09955at 1862.152 kb on - strand, within OKFHMN_09955at 1862.526 kb on + strandat 1862.841 kb on + strandat 1862.846 kb on - strandat 1863.645 kb on + strandat 1863.645 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas58
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1,861,774 - OKFHMN_09955 0.33 -0.1
1,861,799 - OKFHMN_09955 0.37 -0.8
1,862,152 - OKFHMN_09955 0.81 +0.7
1,862,526 + +0.2
1,862,841 + -0.0
1,862,846 - +0.2
1,863,645 + +0.1
1,863,645 + -0.4

Or see this region's nucleotide sequence