Strain Fitness in Escherichia coli ECRC100 around OKFHMN_08440

Experiment: Bas58

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntespY3 and pgpA are separated by 177 nucleotidespgpA and thiL overlap by 23 nucleotidesthiL and nusB are separated by 77 nucleotidesnusB and ribE are separated by 19 nucleotides OKFHMN_08430: espY3 - T3SS effector pentapeptide repeat protein EspY3, at 1,569,895 to 1,571,466 espY3 OKFHMN_08435: pgpA - phosphatidylglycerophosphatase A, at 1,571,644 to 1,572,159 pgpA OKFHMN_08440: thiL - thiamine-phosphate kinase, at 1,572,137 to 1,573,114 thiL OKFHMN_08445: nusB - transcription antitermination factor NusB, at 1,573,192 to 1,573,611 nusB OKFHMN_08450: ribE - 6,7-dimethyl-8-ribityllumazine synthase, at 1,573,631 to 1,574,101 ribE Position (kb) 1572 1573 1574Strain fitness (log2 ratio) -1 0 1at 1571.529 kb on + strandat 1571.530 kb on - strandat 1573.179 kb on - strandat 1573.194 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Bas58
remove
1,571,529 + -1.3
1,571,530 - -0.2
1,573,179 - +0.9
1,573,194 - -0.3

Or see this region's nucleotide sequence