Experiment: Bas58
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt rihA and hscC are separated by 83 nucleotides hscC and OKFHMN_07285 are separated by 59 nucleotides
OKFHMN_07275: rihA - pyrimidine-specific ribonucleoside hydrolase RihA, at 1,307,531 to 1,308,466
rihA
OKFHMN_07280: hscC - molecular chaperone HscC, at 1,308,550 to 1,310,220
hscC
OKFHMN_07285: OKFHMN_07285 - Hsc56 co-chaperone of HscC, at 1,310,280 to 1,311,116
_07285
Position (kb) 1308
1309
1310
1311 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 1307.630 kb on - strand, within rihA at 1307.630 kb on - strand, within rihA at 1307.914 kb on + strand, within rihA at 1307.936 kb on - strand, within rihA at 1307.977 kb on + strand, within rihA at 1308.028 kb on + strand, within rihA at 1308.212 kb on - strand, within rihA at 1308.247 kb on - strand, within rihA at 1308.347 kb on - strand, within rihA at 1308.366 kb on - strand, within rihA at 1308.399 kb on + strand at 1308.541 kb on - strand at 1308.591 kb on + strand at 1308.699 kb on + strand at 1308.816 kb on + strand, within hscC at 1308.974 kb on + strand, within hscC at 1308.990 kb on - strand, within hscC at 1308.990 kb on - strand, within hscC at 1309.021 kb on + strand, within hscC at 1309.174 kb on - strand, within hscC at 1309.249 kb on + strand, within hscC at 1309.250 kb on - strand, within hscC at 1309.250 kb on - strand, within hscC at 1309.292 kb on + strand, within hscC at 1309.292 kb on + strand, within hscC at 1309.293 kb on - strand, within hscC at 1309.587 kb on - strand, within hscC at 1309.623 kb on + strand, within hscC at 1309.653 kb on + strand, within hscC at 1309.762 kb on - strand, within hscC at 1309.878 kb on + strand, within hscC at 1310.034 kb on + strand, within hscC at 1310.055 kb on + strand at 1310.198 kb on - strand at 1310.201 kb on + strand at 1310.201 kb on + strand at 1310.475 kb on - strand, within OKFHMN_07285 at 1310.517 kb on - strand, within OKFHMN_07285 at 1310.520 kb on - strand, within OKFHMN_07285 at 1310.762 kb on - strand, within OKFHMN_07285 at 1310.775 kb on - strand, within OKFHMN_07285 at 1310.788 kb on - strand, within OKFHMN_07285 at 1310.882 kb on + strand, within OKFHMN_07285 at 1310.883 kb on - strand, within OKFHMN_07285 at 1310.965 kb on + strand, within OKFHMN_07285 at 1311.176 kb on - strand at 1311.213 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas58 remove 1,307,630 - rihA OKFHMN_07275 0.11 +0.1 1,307,630 - rihA OKFHMN_07275 0.11 +0.4 1,307,914 + rihA OKFHMN_07275 0.41 -1.0 1,307,936 - rihA OKFHMN_07275 0.43 -1.2 1,307,977 + rihA OKFHMN_07275 0.48 +1.0 1,308,028 + rihA OKFHMN_07275 0.53 +1.3 1,308,212 - rihA OKFHMN_07275 0.73 +0.0 1,308,247 - rihA OKFHMN_07275 0.76 +3.4 1,308,347 - rihA OKFHMN_07275 0.87 +0.6 1,308,366 - rihA OKFHMN_07275 0.89 -0.2 1,308,399 + +0.0 1,308,541 - -0.2 1,308,591 + -0.2 1,308,699 + +0.0 1,308,816 + hscC OKFHMN_07280 0.16 +0.6 1,308,974 + hscC OKFHMN_07280 0.25 -1.5 1,308,990 - hscC OKFHMN_07280 0.26 -0.6 1,308,990 - hscC OKFHMN_07280 0.26 +0.0 1,309,021 + hscC OKFHMN_07280 0.28 +0.4 1,309,174 - hscC OKFHMN_07280 0.37 -0.5 1,309,249 + hscC OKFHMN_07280 0.42 -0.7 1,309,250 - hscC OKFHMN_07280 0.42 -0.4 1,309,250 - hscC OKFHMN_07280 0.42 -0.3 1,309,292 + hscC OKFHMN_07280 0.44 -1.1 1,309,292 + hscC OKFHMN_07280 0.44 +0.1 1,309,293 - hscC OKFHMN_07280 0.44 -0.3 1,309,587 - hscC OKFHMN_07280 0.62 +0.2 1,309,623 + hscC OKFHMN_07280 0.64 +0.1 1,309,653 + hscC OKFHMN_07280 0.66 +0.6 1,309,762 - hscC OKFHMN_07280 0.73 +0.7 1,309,878 + hscC OKFHMN_07280 0.79 -0.9 1,310,034 + hscC OKFHMN_07280 0.89 +1.0 1,310,055 + -1.2 1,310,198 - +0.6 1,310,201 + +0.0 1,310,201 + -0.7 1,310,475 - OKFHMN_07285 0.23 +0.4 1,310,517 - OKFHMN_07285 0.28 +0.6 1,310,520 - OKFHMN_07285 0.29 +0.0 1,310,762 - OKFHMN_07285 0.58 +0.7 1,310,775 - OKFHMN_07285 0.59 -2.0 1,310,788 - OKFHMN_07285 0.61 -0.0 1,310,882 + OKFHMN_07285 0.72 +1.2 1,310,883 - OKFHMN_07285 0.72 +0.8 1,310,965 + OKFHMN_07285 0.82 -0.5 1,311,176 - +1.0 1,311,213 + -0.3
Or see this region's nucleotide sequence