Strain Fitness in Escherichia coli ECRC100 around OKFHMN_07055

Experiment: Bas58

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntrhsA and ybfA are separated by 241 nucleotidesybfA and kdpA are separated by 401 nucleotides OKFHMN_07050: rhsA - RHS element protein, at 1,261,095 to 1,265,294 rhsA OKFHMN_07055: ybfA - Uncharacterized protein YbfA, at 1,265,536 to 1,265,742 ybfA OKFHMN_07060: kdpA - potassium-transporting ATPase subunit KdpA, at 1,266,144 to 1,267,817 kdpA Position (kb) 1265 1266Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1265.424 kb on + strandat 1265.425 kb on - strandat 1265.456 kb on + strandat 1265.519 kb on + strandat 1265.520 kb on - strandat 1265.540 kb on + strandat 1265.619 kb on - strand, within ybfAat 1265.691 kb on - strand, within ybfAat 1265.695 kb on - strand, within ybfAat 1265.724 kb on - strandat 1265.724 kb on - strandat 1265.743 kb on - strandat 1265.814 kb on - strandat 1265.877 kb on - strandat 1266.115 kb on + strandat 1266.116 kb on - strandat 1266.190 kb on + strandat 1266.211 kb on + strandat 1266.211 kb on + strandat 1266.212 kb on - strandat 1266.243 kb on - strandat 1266.380 kb on + strand, within kdpAat 1266.399 kb on + strand, within kdpAat 1266.496 kb on - strand, within kdpA

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas58
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1,265,424 + +1.9
1,265,425 - +0.6
1,265,456 + +3.9
1,265,519 + +0.2
1,265,520 - -0.3
1,265,540 + +0.3
1,265,619 - ybfA OKFHMN_07055 0.40 +2.6
1,265,691 - ybfA OKFHMN_07055 0.75 -0.7
1,265,695 - ybfA OKFHMN_07055 0.77 +0.4
1,265,724 - -0.3
1,265,724 - +0.1
1,265,743 - +0.1
1,265,814 - +0.9
1,265,877 - -0.5
1,266,115 + -1.8
1,266,116 - +0.6
1,266,190 + +0.2
1,266,211 + +0.4
1,266,211 + +0.3
1,266,212 - +0.6
1,266,243 - +1.3
1,266,380 + kdpA OKFHMN_07060 0.14 +0.3
1,266,399 + kdpA OKFHMN_07060 0.15 -0.2
1,266,496 - kdpA OKFHMN_07060 0.21 +0.6

Or see this region's nucleotide sequence