Experiment: Bas58
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ybhI and ybhH are separated by 75 nucleotides ybhH and ybhD are separated by 183 nucleotides
OKFHMN_06660: ybhI - Inner membrane protein YbhI, at 1,186,081 to 1,187,514
ybhI
OKFHMN_06665: ybhH - 4-oxalomesaconate tautomerase, at 1,187,590 to 1,188,642
ybhH
OKFHMN_06670: ybhD - Uncharacterized HTH-type transcriptional regulator YbhD, at 1,188,826 to 1,189,779
ybhD
Position (kb)
1187
1188
1189 Strain fitness (log2 ratio)
-2
-1
0
1 at 1186.784 kb on + strand, within ybhI at 1186.784 kb on + strand, within ybhI at 1186.785 kb on - strand, within ybhI at 1186.794 kb on - strand, within ybhI at 1186.821 kb on + strand, within ybhI at 1186.938 kb on + strand, within ybhI at 1186.940 kb on + strand, within ybhI at 1186.941 kb on - strand, within ybhI at 1186.941 kb on - strand, within ybhI at 1187.187 kb on + strand, within ybhI at 1187.348 kb on - strand, within ybhI at 1187.509 kb on - strand at 1187.763 kb on + strand, within ybhH at 1188.261 kb on + strand, within ybhH at 1188.268 kb on - strand, within ybhH at 1188.283 kb on - strand, within ybhH at 1188.295 kb on - strand, within ybhH at 1188.358 kb on - strand, within ybhH at 1188.358 kb on - strand, within ybhH at 1188.542 kb on - strand at 1189.104 kb on + strand, within ybhD at 1189.412 kb on + strand, within ybhD at 1189.514 kb on + strand, within ybhD at 1189.588 kb on - strand, within ybhD at 1189.588 kb on - strand, within ybhD
Per-strain Table
Position Strand Gene LocusTag Fraction Bas58 remove 1,186,784 + ybhI OKFHMN_06660 0.49 +0.6 1,186,784 + ybhI OKFHMN_06660 0.49 -0.9 1,186,785 - ybhI OKFHMN_06660 0.49 +0.1 1,186,794 - ybhI OKFHMN_06660 0.50 +0.3 1,186,821 + ybhI OKFHMN_06660 0.52 -0.1 1,186,938 + ybhI OKFHMN_06660 0.60 +0.8 1,186,940 + ybhI OKFHMN_06660 0.60 -0.6 1,186,941 - ybhI OKFHMN_06660 0.60 +0.8 1,186,941 - ybhI OKFHMN_06660 0.60 -0.7 1,187,187 + ybhI OKFHMN_06660 0.77 -0.6 1,187,348 - ybhI OKFHMN_06660 0.88 -0.2 1,187,509 - +0.3 1,187,763 + ybhH OKFHMN_06665 0.16 -0.7 1,188,261 + ybhH OKFHMN_06665 0.64 -1.9 1,188,268 - ybhH OKFHMN_06665 0.64 +0.0 1,188,283 - ybhH OKFHMN_06665 0.66 +0.7 1,188,295 - ybhH OKFHMN_06665 0.67 -0.7 1,188,358 - ybhH OKFHMN_06665 0.73 -0.4 1,188,358 - ybhH OKFHMN_06665 0.73 -0.3 1,188,542 - +0.6 1,189,104 + ybhD OKFHMN_06670 0.29 -0.1 1,189,412 + ybhD OKFHMN_06670 0.61 -1.8 1,189,514 + ybhD OKFHMN_06670 0.72 -0.1 1,189,588 - ybhD OKFHMN_06670 0.80 -0.3 1,189,588 - ybhD OKFHMN_06670 0.80 +1.4
Or see this region's nucleotide sequence