Strain Fitness in Escherichia coli ECRC100 around OKFHMN_06665

Experiment: Bas58

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntybhI and ybhH are separated by 75 nucleotidesybhH and ybhD are separated by 183 nucleotides OKFHMN_06660: ybhI - Inner membrane protein YbhI, at 1,186,081 to 1,187,514 ybhI OKFHMN_06665: ybhH - 4-oxalomesaconate tautomerase, at 1,187,590 to 1,188,642 ybhH OKFHMN_06670: ybhD - Uncharacterized HTH-type transcriptional regulator YbhD, at 1,188,826 to 1,189,779 ybhD Position (kb) 1187 1188 1189Strain fitness (log2 ratio) -2 -1 0 1at 1186.784 kb on + strand, within ybhIat 1186.784 kb on + strand, within ybhIat 1186.785 kb on - strand, within ybhIat 1186.794 kb on - strand, within ybhIat 1186.821 kb on + strand, within ybhIat 1186.938 kb on + strand, within ybhIat 1186.940 kb on + strand, within ybhIat 1186.941 kb on - strand, within ybhIat 1186.941 kb on - strand, within ybhIat 1187.187 kb on + strand, within ybhIat 1187.348 kb on - strand, within ybhIat 1187.509 kb on - strandat 1187.763 kb on + strand, within ybhHat 1188.261 kb on + strand, within ybhHat 1188.268 kb on - strand, within ybhHat 1188.283 kb on - strand, within ybhHat 1188.295 kb on - strand, within ybhHat 1188.358 kb on - strand, within ybhHat 1188.358 kb on - strand, within ybhHat 1188.542 kb on - strandat 1189.104 kb on + strand, within ybhDat 1189.412 kb on + strand, within ybhDat 1189.514 kb on + strand, within ybhDat 1189.588 kb on - strand, within ybhDat 1189.588 kb on - strand, within ybhD

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Bas58
remove
1,186,784 + ybhI OKFHMN_06660 0.49 +0.6
1,186,784 + ybhI OKFHMN_06660 0.49 -0.9
1,186,785 - ybhI OKFHMN_06660 0.49 +0.1
1,186,794 - ybhI OKFHMN_06660 0.50 +0.3
1,186,821 + ybhI OKFHMN_06660 0.52 -0.1
1,186,938 + ybhI OKFHMN_06660 0.60 +0.8
1,186,940 + ybhI OKFHMN_06660 0.60 -0.6
1,186,941 - ybhI OKFHMN_06660 0.60 +0.8
1,186,941 - ybhI OKFHMN_06660 0.60 -0.7
1,187,187 + ybhI OKFHMN_06660 0.77 -0.6
1,187,348 - ybhI OKFHMN_06660 0.88 -0.2
1,187,509 - +0.3
1,187,763 + ybhH OKFHMN_06665 0.16 -0.7
1,188,261 + ybhH OKFHMN_06665 0.64 -1.9
1,188,268 - ybhH OKFHMN_06665 0.64 +0.0
1,188,283 - ybhH OKFHMN_06665 0.66 +0.7
1,188,295 - ybhH OKFHMN_06665 0.67 -0.7
1,188,358 - ybhH OKFHMN_06665 0.73 -0.4
1,188,358 - ybhH OKFHMN_06665 0.73 -0.3
1,188,542 - +0.6
1,189,104 + ybhD OKFHMN_06670 0.29 -0.1
1,189,412 + ybhD OKFHMN_06670 0.61 -1.8
1,189,514 + ybhD OKFHMN_06670 0.72 -0.1
1,189,588 - ybhD OKFHMN_06670 0.80 -0.3
1,189,588 - ybhD OKFHMN_06670 0.80 +1.4

Or see this region's nucleotide sequence