Experiment: Bas58
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt exoD and OKFHMN_06615 overlap by 4 nucleotides OKFHMN_06615 and OKFHMN_06620 overlap by 28 nucleotides OKFHMN_06620 and OKFHMN_06625 overlap by 4 nucleotides OKFHMN_06625 and OKFHMN_06630 overlap by 4 nucleotides OKFHMN_06630 and OKFHMN_06635 are separated by 530 nucleotides
OKFHMN_06610: exoD - Putative uncharacterized protein ExoD, at 1,177,918 to 1,178,598
exoD
OKFHMN_06615: OKFHMN_06615 - cruciferin, at 1,178,595 to 1,178,777
_06615
OKFHMN_06620: OKFHMN_06620 - DUF1382 domain-containing protein, at 1,178,750 to 1,178,941
_06620
OKFHMN_06625: OKFHMN_06625 - DUF1382 domain-containing protein, at 1,178,938 to 1,179,021
_06625
OKFHMN_06630: OKFHMN_06630 - Cell division protein ZapA, at 1,179,018 to 1,179,233
_06630
OKFHMN_06635: OKFHMN_06635 - hypothetical protein, at 1,179,764 to 1,180,366
_06635
Position (kb) 1179
1180 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1178.378 kb on - strand, within exoD at 1178.429 kb on - strand, within exoD at 1178.440 kb on + strand, within exoD at 1178.732 kb on + strand, within OKFHMN_06615 at 1178.733 kb on - strand, within OKFHMN_06615 at 1178.776 kb on - strand at 1179.418 kb on + strand at 1179.420 kb on + strand at 1179.457 kb on - strand at 1179.761 kb on - strand at 1179.950 kb on - strand, within OKFHMN_06635 at 1180.100 kb on + strand, within OKFHMN_06635 at 1180.164 kb on + strand, within OKFHMN_06635
Per-strain Table
Position Strand Gene LocusTag Fraction Bas58 remove 1,178,378 - exoD OKFHMN_06610 0.68 +0.3 1,178,429 - exoD OKFHMN_06610 0.75 +0.9 1,178,440 + exoD OKFHMN_06610 0.77 -0.1 1,178,732 + OKFHMN_06615 0.75 -1.1 1,178,733 - OKFHMN_06615 0.75 +1.2 1,178,776 - -0.7 1,179,418 + -0.6 1,179,420 + -1.9 1,179,457 - -1.4 1,179,761 - -1.7 1,179,950 - OKFHMN_06635 0.31 -0.4 1,180,100 + OKFHMN_06635 0.56 +2.6 1,180,164 + OKFHMN_06635 0.66 +0.3
Or see this region's nucleotide sequence