Strain Fitness in Escherichia coli ECRC100 around OKFHMN_04750

Experiment: Bas58

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntgfcB and gfcC overlap by 4 nucleotidesgfcC and gfcD overlap by 1 nucleotidesgfcD and gfcE are separated by 45 nucleotides OKFHMN_04740: gfcB - Uncharacterized lipoprotein GfcB, at 787,563 to 788,207 gfcB OKFHMN_04745: gfcC - Uncharacterized protein GfcC, at 788,204 to 788,950 gfcC OKFHMN_04750: gfcD - Uncharacterized lipoprotein GfcD, at 788,950 to 791,046 gfcD OKFHMN_04755: gfcE - Putative polysaccharide export protein GfcE, at 791,092 to 792,231 gfcE Position (kb) 788 789 790 791 792Strain fitness (log2 ratio) -1 0 1 2at 788.048 kb on + strand, within gfcBat 788.168 kb on + strandat 788.209 kb on + strandat 788.214 kb on + strandat 788.222 kb on + strandat 788.539 kb on + strand, within gfcCat 788.620 kb on + strand, within gfcCat 788.634 kb on + strand, within gfcCat 788.650 kb on + strand, within gfcCat 788.776 kb on + strand, within gfcCat 788.880 kb on + strandat 788.881 kb on - strandat 789.018 kb on - strandat 789.222 kb on + strand, within gfcDat 789.223 kb on - strand, within gfcDat 789.226 kb on + strand, within gfcDat 789.486 kb on + strand, within gfcDat 789.892 kb on + strand, within gfcDat 789.943 kb on + strand, within gfcDat 789.945 kb on + strand, within gfcDat 789.961 kb on + strand, within gfcDat 790.097 kb on + strand, within gfcDat 790.502 kb on + strand, within gfcDat 790.624 kb on + strand, within gfcDat 790.753 kb on + strand, within gfcDat 790.753 kb on + strand, within gfcDat 790.839 kb on + strandat 790.844 kb on + strandat 790.844 kb on + strandat 790.844 kb on + strandat 790.844 kb on + strandat 791.083 kb on + strandat 791.154 kb on + strandat 791.155 kb on - strandat 791.221 kb on + strand, within gfcEat 791.245 kb on - strand, within gfcEat 791.399 kb on + strand, within gfcEat 791.419 kb on + strand, within gfcEat 791.480 kb on - strand, within gfcEat 791.514 kb on + strand, within gfcEat 791.952 kb on + strand, within gfcEat 792.033 kb on + strand, within gfcE

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas58
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788,048 + gfcB OKFHMN_04740 0.75 -0.1
788,168 + -0.4
788,209 + -0.6
788,214 + -0.7
788,222 + +0.4
788,539 + gfcC OKFHMN_04745 0.45 -0.5
788,620 + gfcC OKFHMN_04745 0.56 -0.6
788,634 + gfcC OKFHMN_04745 0.58 -0.1
788,650 + gfcC OKFHMN_04745 0.60 -0.1
788,776 + gfcC OKFHMN_04745 0.77 -1.1
788,880 + -0.5
788,881 - -1.4
789,018 - +0.2
789,222 + gfcD OKFHMN_04750 0.13 +0.3
789,223 - gfcD OKFHMN_04750 0.13 +1.5
789,226 + gfcD OKFHMN_04750 0.13 -0.5
789,486 + gfcD OKFHMN_04750 0.26 -0.1
789,892 + gfcD OKFHMN_04750 0.45 -0.1
789,943 + gfcD OKFHMN_04750 0.47 +0.9
789,945 + gfcD OKFHMN_04750 0.47 +0.3
789,961 + gfcD OKFHMN_04750 0.48 +2.5
790,097 + gfcD OKFHMN_04750 0.55 +0.5
790,502 + gfcD OKFHMN_04750 0.74 +0.4
790,624 + gfcD OKFHMN_04750 0.80 +0.5
790,753 + gfcD OKFHMN_04750 0.86 +0.1
790,753 + gfcD OKFHMN_04750 0.86 +0.0
790,839 + -1.1
790,844 + -0.8
790,844 + +0.3
790,844 + +0.3
790,844 + +0.2
791,083 + -0.5
791,154 + -0.7
791,155 - +0.0
791,221 + gfcE OKFHMN_04755 0.11 -0.5
791,245 - gfcE OKFHMN_04755 0.13 +1.1
791,399 + gfcE OKFHMN_04755 0.27 -0.7
791,419 + gfcE OKFHMN_04755 0.29 +0.5
791,480 - gfcE OKFHMN_04755 0.34 +0.3
791,514 + gfcE OKFHMN_04755 0.37 +0.0
791,952 + gfcE OKFHMN_04755 0.75 -1.3
792,033 + gfcE OKFHMN_04755 0.83 -0.9

Or see this region's nucleotide sequence