Strain Fitness in Escherichia coli ECRC100 around OKFHMN_04520

Experiment: Bas58

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntfabG and cadC1 are separated by 687 nucleotidescadC1 and OKFHMN_04525 are separated by 4 nucleotidesOKFHMN_04525 and eAL are separated by 101 nucleotides OKFHMN_04515: fabG - oxidoreductase, at 736,961 to 737,743 fabG OKFHMN_04520: cadC1 - transcriptional regulator, at 738,431 to 739,243 cadC1 OKFHMN_04525: OKFHMN_04525 - FidL, at 739,248 to 739,739 _04525 OKFHMN_04530: eAL - EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant), at 739,841 to 741,451 eAL Position (kb) 738 739 740Strain fitness (log2 ratio) -1 0 1at 738.001 kb on + strandat 738.072 kb on - strandat 738.151 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas58
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738,001 + +0.5
738,072 - -0.7
738,151 + -0.1

Or see this region's nucleotide sequence