Strain Fitness in Escherichia coli ECRC100 around OKFHMN_04510

Experiment: Bas58

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntOKFHMN_04505 and fimC overlap by 4 nucleotidesfimC and fabG are separated by 145 nucleotides OKFHMN_04505: OKFHMN_04505 - adhesin, at 734,795 to 736,129 _04505 OKFHMN_04510: fimC - P pilus assembly protein, chaperone PapD, at 736,126 to 736,815 fimC OKFHMN_04515: fabG - oxidoreductase, at 736,961 to 737,743 fabG Position (kb) 736 737Strain fitness (log2 ratio) -1 0 1at 735.161 kb on + strand, within OKFHMN_04505at 735.422 kb on + strand, within OKFHMN_04505at 735.424 kb on + strand, within OKFHMN_04505at 735.446 kb on + strand, within OKFHMN_04505at 735.621 kb on + strand, within OKFHMN_04505at 735.700 kb on + strand, within OKFHMN_04505at 735.730 kb on + strand, within OKFHMN_04505at 735.770 kb on + strand, within OKFHMN_04505at 736.034 kb on + strandat 736.108 kb on + strandat 736.111 kb on - strandat 736.603 kb on - strand, within fimCat 736.603 kb on - strand, within fimCat 736.607 kb on - strand, within fimCat 736.609 kb on - strand, within fimCat 736.991 kb on + strandat 737.086 kb on + strand, within fabG

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Bas58
remove
735,161 + OKFHMN_04505 0.27 +0.1
735,422 + OKFHMN_04505 0.47 +0.3
735,424 + OKFHMN_04505 0.47 -0.2
735,446 + OKFHMN_04505 0.49 -0.2
735,621 + OKFHMN_04505 0.62 -0.3
735,700 + OKFHMN_04505 0.68 +0.2
735,730 + OKFHMN_04505 0.70 -0.1
735,770 + OKFHMN_04505 0.73 -1.7
736,034 + +0.1
736,108 + -1.0
736,111 - -1.0
736,603 - fimC OKFHMN_04510 0.69 -1.0
736,603 - fimC OKFHMN_04510 0.69 -0.1
736,607 - fimC OKFHMN_04510 0.70 -0.0
736,609 - fimC OKFHMN_04510 0.70 +0.6
736,991 + +0.3
737,086 + fabG OKFHMN_04515 0.16 +1.5

Or see this region's nucleotide sequence