Strain Fitness in Escherichia coli ECRC100 around OKFHMN_04485

Experiment: Bas58

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntOKFHMN_04480 and OKFHMN_04485 are separated by 268 nucleotidesOKFHMN_04485 and fimA are separated by 42 nucleotidesfimA and fimC are separated by 85 nucleotides OKFHMN_04480: OKFHMN_04480 - hypothetical protein, at 729,812 to 729,922 _04480 OKFHMN_04485: OKFHMN_04485 - hypothetical protein, at 730,191 to 730,814 _04485 OKFHMN_04490: fimA - fimbrial protein, at 730,857 to 731,417 fimA OKFHMN_04495: fimC - P pilus assembly protein, chaperone PapD, at 731,503 to 732,204 fimC Position (kb) 730 731Strain fitness (log2 ratio) -1 0 1 2at 730.402 kb on + strand, within OKFHMN_04485at 730.916 kb on + strand, within fimAat 731.017 kb on + strand, within fimAat 731.257 kb on + strand, within fimAat 731.409 kb on + strandat 731.657 kb on - strand, within fimCat 731.665 kb on - strand, within fimCat 731.665 kb on - strand, within fimC

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Bas58
remove
730,402 + OKFHMN_04485 0.34 -0.7
730,916 + fimA OKFHMN_04490 0.11 -0.1
731,017 + fimA OKFHMN_04490 0.29 -0.0
731,257 + fimA OKFHMN_04490 0.71 +0.2
731,409 + -0.1
731,657 - fimC OKFHMN_04495 0.22 +2.5
731,665 - fimC OKFHMN_04495 0.23 +0.1
731,665 - fimC OKFHMN_04495 0.23 -0.0

Or see this region's nucleotide sequence