Experiment: Bas58
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OKFHMN_04260 and ureG are separated by 255 nucleotides ureG and ureF are separated by 11 nucleotides ureF and ureE are separated by 0 nucleotides ureE and ureC are separated by 9 nucleotides
OKFHMN_04260: OKFHMN_04260 - Transposase, at 681,442 to 681,783
_04260
OKFHMN_04265: ureG - urease accessory protein UreG, at 682,039 to 682,656
ureG
OKFHMN_04270: ureF - Urease accessory protein UreF, at 682,668 to 683,342
ureF
OKFHMN_04275: ureE - urease accessory protein UreE, at 683,343 to 683,807
ureE
OKFHMN_04280: ureC - urease subunit alpha, at 683,817 to 685,520
ureC
Position (kb) 682
683
684 Strain fitness (log2 ratio) -1
0
1
2 at 681.859 kb on + strand at 681.859 kb on + strand at 681.859 kb on + strand at 681.859 kb on + strand at 681.992 kb on + strand at 682.023 kb on - strand at 682.023 kb on - strand at 682.044 kb on + strand at 682.145 kb on - strand, within ureG at 682.280 kb on - strand, within ureG at 682.280 kb on - strand, within ureG at 682.280 kb on - strand, within ureG at 682.286 kb on + strand, within ureG at 682.287 kb on - strand, within ureG at 682.287 kb on - strand, within ureG at 682.289 kb on - strand, within ureG at 682.289 kb on - strand, within ureG at 682.649 kb on - strand at 682.718 kb on + strand at 682.719 kb on - strand at 682.808 kb on + strand, within ureF at 682.809 kb on - strand, within ureF at 682.812 kb on + strand, within ureF at 682.972 kb on - strand, within ureF at 683.486 kb on - strand, within ureE at 683.717 kb on + strand, within ureE at 683.800 kb on + strand at 683.818 kb on + strand at 683.818 kb on + strand at 683.922 kb on - strand at 684.293 kb on + strand, within ureC at 684.294 kb on - strand, within ureC
Per-strain Table
Position Strand Gene LocusTag Fraction Bas58 remove 681,859 + +0.8 681,859 + +0.2 681,859 + +0.8 681,859 + +0.1 681,992 + +0.3 682,023 - +1.2 682,023 - -0.2 682,044 + -1.1 682,145 - ureG OKFHMN_04265 0.17 -0.2 682,280 - ureG OKFHMN_04265 0.39 +0.5 682,280 - ureG OKFHMN_04265 0.39 -0.5 682,280 - ureG OKFHMN_04265 0.39 -0.5 682,286 + ureG OKFHMN_04265 0.40 +0.7 682,287 - ureG OKFHMN_04265 0.40 +0.5 682,287 - ureG OKFHMN_04265 0.40 -0.8 682,289 - ureG OKFHMN_04265 0.40 -0.7 682,289 - ureG OKFHMN_04265 0.40 +0.8 682,649 - +0.3 682,718 + +2.1 682,719 - -0.4 682,808 + ureF OKFHMN_04270 0.21 -1.1 682,809 - ureF OKFHMN_04270 0.21 -0.3 682,812 + ureF OKFHMN_04270 0.21 +1.5 682,972 - ureF OKFHMN_04270 0.45 -0.6 683,486 - ureE OKFHMN_04275 0.31 -0.1 683,717 + ureE OKFHMN_04275 0.80 +0.2 683,800 + -0.8 683,818 + +0.4 683,818 + -0.8 683,922 - +0.7 684,293 + ureC OKFHMN_04280 0.28 -1.3 684,294 - ureC OKFHMN_04280 0.28 +0.4
Or see this region's nucleotide sequence