Experiment: Bas58
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ldtC and bhsA are separated by 82 nucleotides bhsA and comR are separated by 177 nucleotides comR and ycfJ are separated by 61 nucleotides ycfJ and ndh are separated by 226 nucleotides
OKFHMN_03475: ldtC - L,D-transpeptidase LdtC, at 546,617 to 547,576
ldtC
OKFHMN_03480: bhsA - multiple stress resistance protein BhsA, at 547,659 to 547,916
bhsA
OKFHMN_03485: comR - TetR family copper-responsive transcriptional repressor ComR, at 548,094 to 548,789
comR
OKFHMN_03490: ycfJ - Uncharacterized protein YcfJ, at 548,851 to 549,390
ycfJ
OKFHMN_03495: ndh - NADH-quinone dehydrogenase, at 549,617 to 550,921
ndh
Position (kb) 548
549 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 547.643 kb on + strand at 547.661 kb on - strand at 547.667 kb on - strand at 548.062 kb on - strand at 548.145 kb on + strand at 548.182 kb on + strand, within comR at 548.378 kb on + strand, within comR at 548.552 kb on + strand, within comR at 548.684 kb on + strand, within comR at 548.787 kb on + strand at 548.887 kb on - strand at 548.966 kb on + strand, within ycfJ at 548.993 kb on + strand, within ycfJ at 549.491 kb on + strand at 549.544 kb on - strand at 549.610 kb on - strand at 549.655 kb on + strand at 549.656 kb on - strand at 549.674 kb on + strand at 549.731 kb on - strand at 549.732 kb on + strand at 549.733 kb on - strand at 549.733 kb on - strand at 549.735 kb on - strand at 549.735 kb on - strand at 549.735 kb on - strand at 549.735 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas58 remove 547,643 + -0.6 547,661 - +0.8 547,667 - -0.1 548,062 - -0.0 548,145 + -0.5 548,182 + comR OKFHMN_03485 0.13 -0.1 548,378 + comR OKFHMN_03485 0.41 +0.7 548,552 + comR OKFHMN_03485 0.66 +0.9 548,684 + comR OKFHMN_03485 0.85 -0.2 548,787 + -0.3 548,887 - +0.5 548,966 + ycfJ OKFHMN_03490 0.21 +1.6 548,993 + ycfJ OKFHMN_03490 0.26 -0.2 549,491 + -0.3 549,544 - -0.1 549,610 - -0.0 549,655 + -1.8 549,656 - -1.3 549,674 + +0.2 549,731 - +0.5 549,732 + -0.1 549,733 - -0.9 549,733 - -0.8 549,735 - -2.4 549,735 - -2.8 549,735 - +0.2 549,735 - -1.1
Or see this region's nucleotide sequence