Experiment: Bas58
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OKFHMN_03350 and OKFHMN_03355 overlap by 14 nucleotides OKFHMN_03355 and OKFHMN_03360 overlap by 47 nucleotides OKFHMN_03360 and OKFHMN_03365 overlap by 11 nucleotides OKFHMN_03365 and OKFHMN_03370 overlap by 4 nucleotides OKFHMN_03370 and OKFHMN_03375 overlap by 4 nucleotides
OKFHMN_03350: OKFHMN_03350 - Ead/Ea22-like protein, at 526,191 to 526,628
_03350
OKFHMN_03355: OKFHMN_03355 - hypothetical protein, at 526,615 to 526,932
_03355
OKFHMN_03360: OKFHMN_03360 - DUF4752 domain-containing protein, at 526,886 to 527,203
_03360
OKFHMN_03365: OKFHMN_03365 - DUF4406 domain-containing protein, at 527,193 to 527,495
_03365
OKFHMN_03370: OKFHMN_03370 - DNA-binding protein, at 527,492 to 527,809
_03370
OKFHMN_03375: OKFHMN_03375 - DUF1627 domain-containing protein, at 527,806 to 528,522
_03375
Position (kb) 527
528 Strain fitness (log2 ratio) -1
0
1
2 at 526.236 kb on + strand, within OKFHMN_03350 at 526.276 kb on - strand, within OKFHMN_03350 at 526.276 kb on - strand, within OKFHMN_03350 at 526.370 kb on + strand, within OKFHMN_03350 at 526.713 kb on - strand, within OKFHMN_03355 at 526.832 kb on - strand, within OKFHMN_03355 at 526.832 kb on - strand, within OKFHMN_03355 at 526.834 kb on - strand, within OKFHMN_03355 at 526.863 kb on - strand, within OKFHMN_03355 at 526.881 kb on - strand, within OKFHMN_03355 at 526.965 kb on - strand, within OKFHMN_03360 at 527.078 kb on - strand, within OKFHMN_03360 at 527.128 kb on + strand, within OKFHMN_03360 at 527.129 kb on - strand, within OKFHMN_03360 at 527.300 kb on - strand, within OKFHMN_03365 at 527.345 kb on - strand, within OKFHMN_03365 at 527.345 kb on - strand, within OKFHMN_03365 at 527.524 kb on - strand, within OKFHMN_03370 at 527.769 kb on - strand, within OKFHMN_03370 at 527.836 kb on - strand at 528.448 kb on - strand, within OKFHMN_03375
Per-strain Table
Position Strand Gene LocusTag Fraction Bas58 remove 526,236 + OKFHMN_03350 0.10 -0.3 526,276 - OKFHMN_03350 0.19 +2.5 526,276 - OKFHMN_03350 0.19 +2.7 526,370 + OKFHMN_03350 0.41 +1.5 526,713 - OKFHMN_03355 0.31 -0.1 526,832 - OKFHMN_03355 0.68 +1.1 526,832 - OKFHMN_03355 0.68 -0.8 526,834 - OKFHMN_03355 0.69 +0.7 526,863 - OKFHMN_03355 0.78 -1.3 526,881 - OKFHMN_03355 0.84 +0.3 526,965 - OKFHMN_03360 0.25 +0.5 527,078 - OKFHMN_03360 0.60 +1.0 527,128 + OKFHMN_03360 0.76 +0.0 527,129 - OKFHMN_03360 0.76 -0.9 527,300 - OKFHMN_03365 0.35 -1.1 527,345 - OKFHMN_03365 0.50 +0.1 527,345 - OKFHMN_03365 0.50 +0.5 527,524 - OKFHMN_03370 0.10 +0.1 527,769 - OKFHMN_03370 0.87 +1.2 527,836 - +1.1 528,448 - OKFHMN_03375 0.90 -0.2
Or see this region's nucleotide sequence