Strain Fitness in Escherichia coli ECRC100 around OKFHMN_03340

Experiment: Bas58

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOKFHMN_03325 and OKFHMN_03335 are separated by 188 nucleotidesOKFHMN_03335 and OKFHMN_03340 are separated by 115 nucleotidesOKFHMN_03340 and OKFHMN_03345 are separated by 2 nucleotidesOKFHMN_03345 and OKFHMN_03350 are separated by 1 nucleotidesOKFHMN_03350 and OKFHMN_03355 overlap by 14 nucleotidesOKFHMN_03355 and OKFHMN_03360 overlap by 47 nucleotides OKFHMN_03325: OKFHMN_03325 - protein hokC, at 524,787 to 524,999 _03325 OKFHMN_03335: OKFHMN_03335 - hypothetical protein, at 525,188 to 525,292 _03335 OKFHMN_03340: OKFHMN_03340 - DUF551 domain-containing protein, at 525,408 to 525,995 _03340 OKFHMN_03345: OKFHMN_03345 - hypothetical protein, at 525,998 to 526,189 _03345 OKFHMN_03350: OKFHMN_03350 - Ead/Ea22-like protein, at 526,191 to 526,628 _03350 OKFHMN_03355: OKFHMN_03355 - hypothetical protein, at 526,615 to 526,932 _03355 OKFHMN_03360: OKFHMN_03360 - DUF4752 domain-containing protein, at 526,886 to 527,203 _03360 Position (kb) 525 526Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 525.042 kb on + strandat 526.010 kb on - strandat 526.032 kb on - strand, within OKFHMN_03345at 526.236 kb on + strand, within OKFHMN_03350at 526.276 kb on - strand, within OKFHMN_03350at 526.276 kb on - strand, within OKFHMN_03350at 526.370 kb on + strand, within OKFHMN_03350at 526.713 kb on - strand, within OKFHMN_03355at 526.832 kb on - strand, within OKFHMN_03355at 526.832 kb on - strand, within OKFHMN_03355at 526.834 kb on - strand, within OKFHMN_03355at 526.863 kb on - strand, within OKFHMN_03355at 526.881 kb on - strand, within OKFHMN_03355at 526.965 kb on - strand, within OKFHMN_03360

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas58
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525,042 + +0.7
526,010 - -4.1
526,032 - OKFHMN_03345 0.18 +0.1
526,236 + OKFHMN_03350 0.10 -0.3
526,276 - OKFHMN_03350 0.19 +2.5
526,276 - OKFHMN_03350 0.19 +2.7
526,370 + OKFHMN_03350 0.41 +1.5
526,713 - OKFHMN_03355 0.31 -0.1
526,832 - OKFHMN_03355 0.68 +1.1
526,832 - OKFHMN_03355 0.68 -0.8
526,834 - OKFHMN_03355 0.69 +0.7
526,863 - OKFHMN_03355 0.78 -1.3
526,881 - OKFHMN_03355 0.84 +0.3
526,965 - OKFHMN_03360 0.25 +0.5

Or see this region's nucleotide sequence