Experiment: Bas58
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OKFHMN_02730 and iS285 are separated by 29 nucleotides iS285 and OKFHMN_02740 are separated by 255 nucleotides OKFHMN_02740 and nleH1-2 are separated by 65 nucleotides nleH1-2 and OKFHMN_02750 are separated by 473 nucleotides
OKFHMN_02730: OKFHMN_02730 - Mutator family transposase, at 437,995 to 438,342
_02730
OKFHMN_02735: iS285 - Transposase (or an inactivated derivative), at 438,372 to 438,629
iS285
OKFHMN_02740: OKFHMN_02740 - T3SS secreted effector NleF, at 438,885 to 439,244
_02740
OKFHMN_02745: nleH1-2 - type III secretion system effector kinase NleH1-2, at 439,310 to 440,221
nleH1-2
OKFHMN_02750: OKFHMN_02750 - Tyr recombinase domain-containing protein, at 440,695 to 441,387
_02750
Position (kb) 439
440
441 Strain fitness (log2 ratio) -1
0
1
2 at 438.341 kb on - strand at 438.369 kb on - strand at 438.417 kb on + strand, within iS285 at 438.418 kb on - strand, within iS285 at 438.591 kb on - strand, within iS285 at 438.689 kb on - strand at 438.705 kb on - strand at 438.742 kb on - strand at 438.797 kb on - strand at 438.921 kb on - strand, within OKFHMN_02740 at 439.101 kb on - strand, within OKFHMN_02740 at 440.070 kb on + strand, within nleH1-2 at 440.139 kb on - strand at 440.201 kb on + strand at 440.247 kb on - strand at 440.250 kb on + strand at 440.547 kb on + strand at 440.869 kb on + strand, within OKFHMN_02750 at 440.931 kb on - strand, within OKFHMN_02750 at 440.931 kb on - strand, within OKFHMN_02750 at 441.019 kb on - strand, within OKFHMN_02750 at 441.171 kb on - strand, within OKFHMN_02750
Per-strain Table
Position Strand Gene LocusTag Fraction Bas58 remove 438,341 - -0.1 438,369 - -0.3 438,417 + iS285 OKFHMN_02735 0.17 +0.3 438,418 - iS285 OKFHMN_02735 0.18 +0.1 438,591 - iS285 OKFHMN_02735 0.85 +0.2 438,689 - +0.5 438,705 - +0.5 438,742 - +0.3 438,797 - +2.0 438,921 - OKFHMN_02740 0.10 -0.9 439,101 - OKFHMN_02740 0.60 -0.1 440,070 + nleH1-2 OKFHMN_02745 0.83 -0.9 440,139 - -0.0 440,201 + -1.5 440,247 - +2.1 440,250 + -1.3 440,547 + +0.1 440,869 + OKFHMN_02750 0.25 -0.1 440,931 - OKFHMN_02750 0.34 -0.9 440,931 - OKFHMN_02750 0.34 +1.5 441,019 - OKFHMN_02750 0.47 +0.7 441,171 - OKFHMN_02750 0.69 +0.7
Or see this region's nucleotide sequence