Strain Fitness in Escherichia coli ECRC100 around OKFHMN_02050

Experiment: Bas58

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOKFHMN_02040 and OKFHMN_02045 overlap by 14 nucleotidesOKFHMN_02045 and OKFHMN_02050 are separated by 154 nucleotidesOKFHMN_02050 and OKFHMN_02055 overlap by 4 nucleotidesOKFHMN_02055 and OKFHMN_02060 are separated by 15 nucleotides OKFHMN_02040: OKFHMN_02040 - DNA-binding protein, at 309,830 to 310,951 _02040 OKFHMN_02045: OKFHMN_02045 - hypothetical protein, at 310,938 to 311,588 _02045 OKFHMN_02050: OKFHMN_02050 - hypothetical protein, at 311,743 to 311,973 _02050 OKFHMN_02055: OKFHMN_02055 - DUF977 domain-containing protein, at 311,970 to 312,392 _02055 OKFHMN_02060: OKFHMN_02060 - DUF1627 domain-containing protein, at 312,408 to 313,169 _02060 Position (kb) 311 312Strain fitness (log2 ratio) -1 0 1at 311.205 kb on - strand, within OKFHMN_02045at 311.245 kb on - strand, within OKFHMN_02045at 311.271 kb on - strand, within OKFHMN_02045at 311.494 kb on - strand, within OKFHMN_02045at 311.494 kb on - strand, within OKFHMN_02045at 311.589 kb on - strandat 312.023 kb on + strand, within OKFHMN_02055at 312.224 kb on - strand, within OKFHMN_02055at 312.226 kb on - strand, within OKFHMN_02055

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas58
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311,205 - OKFHMN_02045 0.41 -0.3
311,245 - OKFHMN_02045 0.47 +1.0
311,271 - OKFHMN_02045 0.51 +0.3
311,494 - OKFHMN_02045 0.85 +0.9
311,494 - OKFHMN_02045 0.85 -0.1
311,589 - -0.6
312,023 + OKFHMN_02055 0.13 -1.4
312,224 - OKFHMN_02055 0.60 -0.6
312,226 - OKFHMN_02055 0.61 -1.3

Or see this region's nucleotide sequence