Experiment: Bas58
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OKFHMN_01770 and OKFHMN_01775 are separated by 219 nucleotides OKFHMN_01775 and ydbL are separated by 413 nucleotides ydbL and OKFHMN_01785 are separated by 7 nucleotides OKFHMN_01785 and ynbE overlap by 4 nucleotides
OKFHMN_01770: OKFHMN_01770 - BigB-like protein, at 261,233 to 263,692
_01770
OKFHMN_01775: OKFHMN_01775 - surface-exposed virulence protein BigA, at 263,912 to 266,791
_01775
OKFHMN_01780: ydbL - DUF1318 domain-containing protein, at 267,205 to 267,528
ydbL
OKFHMN_01785: OKFHMN_01785 - YnbE family lipoprotein, at 267,536 to 267,721
_01785
OKFHMN_01790: ynbE - YdbH family protein, at 267,718 to 270,357
ynbE
Position (kb) 263
264
265
266
267 Strain fitness (log2 ratio) -1
0
1
2 at 263.205 kb on - strand, within OKFHMN_01770 at 263.237 kb on - strand, within OKFHMN_01770 at 263.240 kb on + strand, within OKFHMN_01770 at 263.621 kb on - strand at 263.846 kb on + strand at 263.868 kb on - strand at 263.898 kb on + strand at 264.224 kb on + strand, within OKFHMN_01775 at 264.299 kb on - strand, within OKFHMN_01775 at 264.389 kb on + strand, within OKFHMN_01775 at 264.415 kb on - strand, within OKFHMN_01775 at 264.428 kb on - strand, within OKFHMN_01775 at 264.472 kb on + strand, within OKFHMN_01775 at 264.497 kb on - strand, within OKFHMN_01775 at 265.096 kb on + strand, within OKFHMN_01775 at 265.096 kb on + strand, within OKFHMN_01775 at 265.097 kb on - strand, within OKFHMN_01775 at 265.210 kb on - strand, within OKFHMN_01775 at 265.496 kb on - strand, within OKFHMN_01775 at 265.496 kb on - strand, within OKFHMN_01775 at 265.538 kb on - strand, within OKFHMN_01775 at 265.582 kb on - strand, within OKFHMN_01775 at 265.584 kb on - strand, within OKFHMN_01775 at 265.756 kb on + strand, within OKFHMN_01775 at 266.058 kb on + strand, within OKFHMN_01775 at 266.138 kb on - strand, within OKFHMN_01775 at 266.204 kb on - strand, within OKFHMN_01775 at 266.252 kb on + strand, within OKFHMN_01775 at 266.501 kb on - strand, within OKFHMN_01775 at 266.810 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas58 remove 263,205 - OKFHMN_01770 0.80 +1.0 263,237 - OKFHMN_01770 0.81 +0.0 263,240 + OKFHMN_01770 0.82 +1.4 263,621 - +0.0 263,846 + +0.3 263,868 - -1.2 263,898 + +1.4 264,224 + OKFHMN_01775 0.11 -0.6 264,299 - OKFHMN_01775 0.13 +0.7 264,389 + OKFHMN_01775 0.17 +0.1 264,415 - OKFHMN_01775 0.17 +0.6 264,428 - OKFHMN_01775 0.18 +1.0 264,472 + OKFHMN_01775 0.19 +1.4 264,497 - OKFHMN_01775 0.20 +0.8 265,096 + OKFHMN_01775 0.41 +0.5 265,096 + OKFHMN_01775 0.41 -0.2 265,097 - OKFHMN_01775 0.41 +0.3 265,210 - OKFHMN_01775 0.45 +0.8 265,496 - OKFHMN_01775 0.55 +1.2 265,496 - OKFHMN_01775 0.55 +0.8 265,538 - OKFHMN_01775 0.56 -0.7 265,582 - OKFHMN_01775 0.58 +0.4 265,584 - OKFHMN_01775 0.58 +2.7 265,756 + OKFHMN_01775 0.64 -0.1 266,058 + OKFHMN_01775 0.75 +1.4 266,138 - OKFHMN_01775 0.77 +0.9 266,204 - OKFHMN_01775 0.80 -1.6 266,252 + OKFHMN_01775 0.81 +0.2 266,501 - OKFHMN_01775 0.90 +0.4 266,810 - +0.4
Or see this region's nucleotide sequence