Strain Fitness in Escherichia coli ECRC100 around OKFHMN_00435

Experiment: Bas58

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyncB and OKFHMN_00430 are separated by 201 nucleotidesOKFHMN_00430 and finO are separated by 136 nucleotidesfinO and dAP2 are separated by 102 nucleotides OKFHMN_00420: yncB - Uncharacterized endonuclease, at 87,167 to 87,628 yncB OKFHMN_00430: OKFHMN_00430 - hypothetical protein, at 87,830 to 88,081 _00430 OKFHMN_00435: finO - Fertility inhibition protein, at 88,218 to 88,778 finO OKFHMN_00440: dAP2 - Uncharacterized protein in traX-finO intergenic region, at 88,881 to 89,741 dAP2 Position (kb) 88 89Strain fitness (log2 ratio) -2 -1 0 1 2at 87.279 kb on + strand, within yncBat 87.288 kb on + strand, within yncBat 87.289 kb on - strand, within yncBat 87.291 kb on - strand, within yncBat 87.316 kb on + strand, within yncBat 87.317 kb on - strand, within yncBat 87.454 kb on - strand, within yncBat 87.481 kb on + strand, within yncBat 87.482 kb on - strand, within yncBat 87.546 kb on - strand, within yncBat 87.569 kb on - strand, within yncBat 87.619 kb on - strandat 87.747 kb on + strandat 88.090 kb on - strandat 88.102 kb on + strandat 88.113 kb on + strandat 88.116 kb on + strandat 88.116 kb on + strandat 88.116 kb on + strandat 88.128 kb on + strandat 88.128 kb on + strandat 88.129 kb on - strandat 88.129 kb on - strandat 88.176 kb on - strandat 88.277 kb on + strand, within finOat 88.298 kb on - strand, within finOat 88.298 kb on - strand, within finOat 88.319 kb on + strand, within finOat 88.320 kb on - strand, within finOat 88.320 kb on - strand, within finOat 88.320 kb on - strand, within finOat 88.320 kb on - strand, within finOat 88.334 kb on - strand, within finOat 88.518 kb on + strand, within finOat 88.579 kb on + strand, within finOat 88.783 kb on - strandat 88.783 kb on - strandat 88.867 kb on - strandat 88.873 kb on - strandat 88.917 kb on + strandat 88.917 kb on + strandat 88.918 kb on - strandat 88.920 kb on + strandat 88.945 kb on + strandat 88.954 kb on + strandat 88.955 kb on - strandat 88.989 kb on - strand, within dAP2at 88.992 kb on - strand, within dAP2at 89.011 kb on + strand, within dAP2at 89.012 kb on - strand, within dAP2at 89.012 kb on - strand, within dAP2at 89.013 kb on + strand, within dAP2at 89.013 kb on + strand, within dAP2at 89.013 kb on + strand, within dAP2at 89.014 kb on - strand, within dAP2at 89.014 kb on - strand, within dAP2at 89.014 kb on - strand, within dAP2at 89.014 kb on - strand, within dAP2at 89.014 kb on - strand, within dAP2at 89.014 kb on - strand, within dAP2at 89.111 kb on - strand, within dAP2at 89.143 kb on - strand, within dAP2at 89.149 kb on - strand, within dAP2at 89.212 kb on - strand, within dAP2at 89.212 kb on - strand, within dAP2at 89.212 kb on - strand, within dAP2at 89.212 kb on - strand, within dAP2at 89.456 kb on + strand, within dAP2at 89.457 kb on - strand, within dAP2at 89.493 kb on - strand, within dAP2at 89.493 kb on - strand, within dAP2at 89.496 kb on - strand, within dAP2at 89.652 kb on + strand, within dAP2at 89.652 kb on + strand, within dAP2at 89.654 kb on - strand, within dAP2at 89.658 kb on - strandat 89.674 kb on - strandat 89.674 kb on - strandat 89.675 kb on + strandat 89.676 kb on - strandat 89.746 kb on - strandat 89.755 kb on + strandat 89.756 kb on - strandat 89.756 kb on - strandat 89.764 kb on + strandat 89.764 kb on + strandat 89.770 kb on + strandat 89.770 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas58
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87,279 + yncB OKFHMN_00420 0.24 -0.2
87,288 + yncB OKFHMN_00420 0.26 -0.9
87,289 - yncB OKFHMN_00420 0.26 +0.4
87,291 - yncB OKFHMN_00420 0.27 -0.9
87,316 + yncB OKFHMN_00420 0.32 +0.3
87,317 - yncB OKFHMN_00420 0.32 -0.3
87,454 - yncB OKFHMN_00420 0.62 +0.2
87,481 + yncB OKFHMN_00420 0.68 +0.3
87,482 - yncB OKFHMN_00420 0.68 -0.8
87,546 - yncB OKFHMN_00420 0.82 +0.2
87,569 - yncB OKFHMN_00420 0.87 +0.1
87,619 - -0.1
87,747 + +1.6
88,090 - -1.8
88,102 + -0.2
88,113 + -0.5
88,116 + -0.8
88,116 + -1.7
88,116 + -0.3
88,128 + -0.1
88,128 + +2.0
88,129 - +0.3
88,129 - +0.6
88,176 - +0.8
88,277 + finO OKFHMN_00435 0.11 -0.1
88,298 - finO OKFHMN_00435 0.14 +0.4
88,298 - finO OKFHMN_00435 0.14 +0.7
88,319 + finO OKFHMN_00435 0.18 -0.9
88,320 - finO OKFHMN_00435 0.18 -0.2
88,320 - finO OKFHMN_00435 0.18 +1.6
88,320 - finO OKFHMN_00435 0.18 -0.6
88,320 - finO OKFHMN_00435 0.18 +1.0
88,334 - finO OKFHMN_00435 0.21 +0.7
88,518 + finO OKFHMN_00435 0.53 +0.1
88,579 + finO OKFHMN_00435 0.64 -0.4
88,783 - -1.1
88,783 - +0.5
88,867 - +0.3
88,873 - -1.2
88,917 + -0.7
88,917 + +0.8
88,918 - +0.1
88,920 + -0.6
88,945 + +0.3
88,954 + -0.3
88,955 - -0.7
88,989 - dAP2 OKFHMN_00440 0.13 -0.3
88,992 - dAP2 OKFHMN_00440 0.13 +1.3
89,011 + dAP2 OKFHMN_00440 0.15 +0.9
89,012 - dAP2 OKFHMN_00440 0.15 +0.0
89,012 - dAP2 OKFHMN_00440 0.15 +1.1
89,013 + dAP2 OKFHMN_00440 0.15 -0.2
89,013 + dAP2 OKFHMN_00440 0.15 +1.9
89,013 + dAP2 OKFHMN_00440 0.15 +0.3
89,014 - dAP2 OKFHMN_00440 0.15 -0.3
89,014 - dAP2 OKFHMN_00440 0.15 +0.3
89,014 - dAP2 OKFHMN_00440 0.15 -0.0
89,014 - dAP2 OKFHMN_00440 0.15 +0.2
89,014 - dAP2 OKFHMN_00440 0.15 +1.3
89,014 - dAP2 OKFHMN_00440 0.15 -0.0
89,111 - dAP2 OKFHMN_00440 0.27 +1.1
89,143 - dAP2 OKFHMN_00440 0.30 +1.3
89,149 - dAP2 OKFHMN_00440 0.31 -0.7
89,212 - dAP2 OKFHMN_00440 0.38 +0.5
89,212 - dAP2 OKFHMN_00440 0.38 -0.7
89,212 - dAP2 OKFHMN_00440 0.38 -0.8
89,212 - dAP2 OKFHMN_00440 0.38 +0.7
89,456 + dAP2 OKFHMN_00440 0.67 +0.0
89,457 - dAP2 OKFHMN_00440 0.67 +0.4
89,493 - dAP2 OKFHMN_00440 0.71 +0.6
89,493 - dAP2 OKFHMN_00440 0.71 +0.1
89,496 - dAP2 OKFHMN_00440 0.71 -1.3
89,652 + dAP2 OKFHMN_00440 0.90 -0.3
89,652 + dAP2 OKFHMN_00440 0.90 -1.2
89,654 - dAP2 OKFHMN_00440 0.90 -0.7
89,658 - -0.4
89,674 - +0.3
89,674 - +1.2
89,675 + +0.6
89,676 - -0.0
89,746 - +0.7
89,755 + +0.6
89,756 - -1.3
89,756 - +0.0
89,764 + -0.2
89,764 + -0.8
89,770 + +1.0
89,770 + -1.8

Or see this region's nucleotide sequence