Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_13715

Experiment: no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOKGIIK_13710 and OKGIIK_13715 are separated by 70 nucleotidesOKGIIK_13715 and OKGIIK_13720 are separated by 72 nucleotidesOKGIIK_13720 and mnmG are separated by 598 nucleotides OKGIIK_13710: OKGIIK_13710 - Aldose epimerase, at 2,973,944 to 2,974,945 _13710 OKGIIK_13715: OKGIIK_13715 - Aminopeptidase N, at 2,975,016 to 2,977,679 _13715 OKGIIK_13720: OKGIIK_13720 - hypothetical protein, at 2,977,752 to 2,977,937 _13720 OKGIIK_13725: mnmG - tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG, at 2,978,536 to 2,980,413 mnmG Position (kb) 2975 2976 2977 2978Strain fitness (log2 ratio) -2 -1 0 1 2at 2974.212 kb on + strand, within OKGIIK_13710at 2974.212 kb on + strand, within OKGIIK_13710at 2974.212 kb on + strand, within OKGIIK_13710at 2974.212 kb on + strand, within OKGIIK_13710at 2974.212 kb on + strand, within OKGIIK_13710at 2974.212 kb on + strand, within OKGIIK_13710at 2974.212 kb on + strand, within OKGIIK_13710at 2974.213 kb on - strand, within OKGIIK_13710at 2974.213 kb on - strand, within OKGIIK_13710at 2974.213 kb on - strand, within OKGIIK_13710at 2974.213 kb on - strand, within OKGIIK_13710at 2974.213 kb on - strand, within OKGIIK_13710at 2974.290 kb on + strand, within OKGIIK_13710at 2974.290 kb on + strand, within OKGIIK_13710at 2974.290 kb on + strand, within OKGIIK_13710at 2974.290 kb on + strand, within OKGIIK_13710at 2974.290 kb on + strand, within OKGIIK_13710at 2974.290 kb on + strand, within OKGIIK_13710at 2974.290 kb on + strand, within OKGIIK_13710at 2974.290 kb on + strand, within OKGIIK_13710at 2974.291 kb on - strand, within OKGIIK_13710at 2974.291 kb on - strand, within OKGIIK_13710at 2974.291 kb on - strand, within OKGIIK_13710at 2974.291 kb on - strand, within OKGIIK_13710at 2974.291 kb on - strand, within OKGIIK_13710at 2974.291 kb on - strand, within OKGIIK_13710at 2974.291 kb on - strand, within OKGIIK_13710at 2974.291 kb on - strand, within OKGIIK_13710at 2974.291 kb on - strand, within OKGIIK_13710at 2974.291 kb on - strand, within OKGIIK_13710at 2974.291 kb on - strand, within OKGIIK_13710at 2974.291 kb on - strand, within OKGIIK_13710at 2974.398 kb on + strand, within OKGIIK_13710at 2974.398 kb on + strand, within OKGIIK_13710at 2974.398 kb on + strand, within OKGIIK_13710at 2974.398 kb on + strand, within OKGIIK_13710at 2974.399 kb on - strand, within OKGIIK_13710at 2974.399 kb on - strand, within OKGIIK_13710at 2974.399 kb on - strand, within OKGIIK_13710at 2974.399 kb on - strand, within OKGIIK_13710at 2974.978 kb on + strandat 2974.978 kb on + strandat 2975.068 kb on - strandat 2975.257 kb on - strandat 2975.364 kb on + strand, within OKGIIK_13715at 2975.364 kb on + strand, within OKGIIK_13715at 2975.364 kb on + strand, within OKGIIK_13715at 2975.364 kb on + strand, within OKGIIK_13715at 2975.364 kb on + strand, within OKGIIK_13715at 2975.364 kb on + strand, within OKGIIK_13715at 2975.365 kb on - strand, within OKGIIK_13715at 2975.365 kb on - strand, within OKGIIK_13715at 2975.365 kb on - strand, within OKGIIK_13715at 2975.365 kb on - strand, within OKGIIK_13715at 2975.365 kb on - strand, within OKGIIK_13715at 2975.365 kb on - strand, within OKGIIK_13715at 2975.365 kb on - strand, within OKGIIK_13715at 2975.470 kb on - strand, within OKGIIK_13715at 2975.601 kb on + strand, within OKGIIK_13715at 2975.601 kb on + strand, within OKGIIK_13715at 2975.601 kb on + strand, within OKGIIK_13715at 2975.601 kb on + strand, within OKGIIK_13715at 2975.601 kb on + strand, within OKGIIK_13715at 2975.601 kb on + strand, within OKGIIK_13715at 2975.602 kb on - strand, within OKGIIK_13715at 2975.602 kb on - strand, within OKGIIK_13715at 2975.602 kb on - strand, within OKGIIK_13715at 2975.602 kb on - strand, within OKGIIK_13715at 2975.602 kb on - strand, within OKGIIK_13715at 2975.602 kb on - strand, within OKGIIK_13715at 2975.602 kb on - strand, within OKGIIK_13715at 2975.602 kb on - strand, within OKGIIK_13715at 2975.603 kb on - strand, within OKGIIK_13715at 2975.649 kb on + strand, within OKGIIK_13715at 2975.649 kb on + strand, within OKGIIK_13715at 2975.649 kb on + strand, within OKGIIK_13715at 2975.649 kb on + strand, within OKGIIK_13715at 2975.649 kb on + strand, within OKGIIK_13715at 2975.650 kb on - strand, within OKGIIK_13715at 2975.650 kb on - strand, within OKGIIK_13715at 2975.722 kb on - strand, within OKGIIK_13715at 2975.722 kb on - strand, within OKGIIK_13715at 2975.769 kb on + strand, within OKGIIK_13715at 2975.769 kb on + strand, within OKGIIK_13715at 2975.770 kb on - strand, within OKGIIK_13715at 2975.781 kb on + strand, within OKGIIK_13715at 2975.781 kb on + strand, within OKGIIK_13715at 2975.781 kb on + strand, within OKGIIK_13715at 2975.782 kb on - strand, within OKGIIK_13715at 2975.782 kb on - strand, within OKGIIK_13715at 2975.782 kb on - strand, within OKGIIK_13715at 2975.782 kb on - strand, within OKGIIK_13715at 2975.782 kb on - strand, within OKGIIK_13715at 2975.910 kb on + strand, within OKGIIK_13715at 2975.911 kb on - strand, within OKGIIK_13715at 2975.943 kb on + strand, within OKGIIK_13715at 2975.943 kb on + strand, within OKGIIK_13715at 2975.943 kb on + strand, within OKGIIK_13715at 2975.943 kb on + strand, within OKGIIK_13715at 2975.944 kb on - strand, within OKGIIK_13715at 2975.944 kb on - strand, within OKGIIK_13715at 2975.944 kb on - strand, within OKGIIK_13715at 2975.944 kb on - strand, within OKGIIK_13715at 2975.944 kb on - strand, within OKGIIK_13715at 2976.153 kb on + strand, within OKGIIK_13715at 2976.153 kb on + strand, within OKGIIK_13715at 2976.153 kb on + strand, within OKGIIK_13715at 2976.153 kb on + strand, within OKGIIK_13715at 2976.154 kb on - strand, within OKGIIK_13715at 2976.154 kb on - strand, within OKGIIK_13715at 2976.154 kb on - strand, within OKGIIK_13715at 2976.154 kb on - strand, within OKGIIK_13715at 2976.174 kb on + strand, within OKGIIK_13715at 2976.175 kb on - strand, within OKGIIK_13715at 2976.175 kb on - strand, within OKGIIK_13715at 2976.175 kb on - strand, within OKGIIK_13715at 2976.175 kb on - strand, within OKGIIK_13715at 2976.189 kb on + strand, within OKGIIK_13715at 2976.189 kb on + strand, within OKGIIK_13715at 2976.189 kb on + strand, within OKGIIK_13715at 2976.190 kb on - strand, within OKGIIK_13715at 2976.268 kb on - strand, within OKGIIK_13715at 2976.354 kb on + strand, within OKGIIK_13715at 2976.354 kb on + strand, within OKGIIK_13715at 2976.354 kb on + strand, within OKGIIK_13715at 2976.355 kb on - strand, within OKGIIK_13715at 2976.355 kb on - strand, within OKGIIK_13715at 2976.355 kb on - strand, within OKGIIK_13715at 2976.366 kb on + strand, within OKGIIK_13715at 2976.367 kb on - strand, within OKGIIK_13715at 2976.367 kb on - strand, within OKGIIK_13715at 2976.429 kb on + strand, within OKGIIK_13715at 2976.429 kb on + strand, within OKGIIK_13715at 2976.429 kb on + strand, within OKGIIK_13715at 2976.429 kb on + strand, within OKGIIK_13715at 2976.429 kb on + strand, within OKGIIK_13715at 2976.429 kb on + strand, within OKGIIK_13715at 2976.429 kb on + strand, within OKGIIK_13715at 2976.430 kb on - strand, within OKGIIK_13715at 2976.430 kb on - strand, within OKGIIK_13715at 2976.430 kb on - strand, within OKGIIK_13715at 2976.430 kb on - strand, within OKGIIK_13715at 2976.430 kb on - strand, within OKGIIK_13715at 2976.430 kb on - strand, within OKGIIK_13715at 2976.696 kb on + strand, within OKGIIK_13715at 2976.786 kb on + strand, within OKGIIK_13715at 2976.786 kb on + strand, within OKGIIK_13715at 2976.787 kb on - strand, within OKGIIK_13715at 2977.038 kb on + strand, within OKGIIK_13715at 2977.039 kb on - strand, within OKGIIK_13715at 2977.039 kb on - strand, within OKGIIK_13715at 2977.173 kb on + strand, within OKGIIK_13715at 2977.173 kb on + strand, within OKGIIK_13715at 2977.174 kb on - strand, within OKGIIK_13715at 2977.174 kb on - strand, within OKGIIK_13715at 2977.174 kb on - strand, within OKGIIK_13715at 2977.174 kb on - strand, within OKGIIK_13715at 2977.900 kb on + strand, within OKGIIK_13720at 2977.901 kb on - strand, within OKGIIK_13720at 2977.901 kb on - strand, within OKGIIK_13720at 2977.901 kb on - strand, within OKGIIK_13720at 2977.901 kb on - strand, within OKGIIK_13720at 2978.018 kb on - strandat 2978.018 kb on - strandat 2978.113 kb on - strandat 2978.137 kb on - strandat 2978.137 kb on - strandat 2978.137 kb on - strandat 2978.183 kb on - strandat 2978.183 kb on - strandat 2978.183 kb on - strandat 2978.183 kb on - strandat 2978.183 kb on - strandat 2978.233 kb on - strandat 2978.233 kb on - strandat 2978.233 kb on - strandat 2978.233 kb on - strandat 2978.233 kb on - strandat 2978.233 kb on - strandat 2978.233 kb on - strandat 2978.233 kb on - strandat 2978.233 kb on - strandat 2978.233 kb on - strandat 2978.233 kb on - strandat 2978.233 kb on - strandat 2978.554 kb on + strandat 2978.555 kb on - strandat 2978.555 kb on - strandat 2978.555 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction no stress control
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2,974,212 + OKGIIK_13710 0.27 -0.4
2,974,212 + OKGIIK_13710 0.27 +1.3
2,974,212 + OKGIIK_13710 0.27 +1.8
2,974,212 + OKGIIK_13710 0.27 -1.1
2,974,212 + OKGIIK_13710 0.27 +0.2
2,974,212 + OKGIIK_13710 0.27 -1.0
2,974,212 + OKGIIK_13710 0.27 +0.1
2,974,213 - OKGIIK_13710 0.27 +0.7
2,974,213 - OKGIIK_13710 0.27 +0.8
2,974,213 - OKGIIK_13710 0.27 +0.3
2,974,213 - OKGIIK_13710 0.27 -1.1
2,974,213 - OKGIIK_13710 0.27 +0.3
2,974,290 + OKGIIK_13710 0.35 +0.0
2,974,290 + OKGIIK_13710 0.35 +1.3
2,974,290 + OKGIIK_13710 0.35 +1.0
2,974,290 + OKGIIK_13710 0.35 -0.8
2,974,290 + OKGIIK_13710 0.35 +1.2
2,974,290 + OKGIIK_13710 0.35 -2.6
2,974,290 + OKGIIK_13710 0.35 +0.9
2,974,290 + OKGIIK_13710 0.35 -1.1
2,974,291 - OKGIIK_13710 0.35 -0.1
2,974,291 - OKGIIK_13710 0.35 -0.3
2,974,291 - OKGIIK_13710 0.35 +0.8
2,974,291 - OKGIIK_13710 0.35 +1.5
2,974,291 - OKGIIK_13710 0.35 +0.5
2,974,291 - OKGIIK_13710 0.35 +1.4
2,974,291 - OKGIIK_13710 0.35 +0.2
2,974,291 - OKGIIK_13710 0.35 +0.1
2,974,291 - OKGIIK_13710 0.35 -0.3
2,974,291 - OKGIIK_13710 0.35 -0.0
2,974,291 - OKGIIK_13710 0.35 -0.4
2,974,291 - OKGIIK_13710 0.35 -0.4
2,974,398 + OKGIIK_13710 0.45 -0.4
2,974,398 + OKGIIK_13710 0.45 -0.9
2,974,398 + OKGIIK_13710 0.45 -0.6
2,974,398 + OKGIIK_13710 0.45 +0.0
2,974,399 - OKGIIK_13710 0.45 +0.1
2,974,399 - OKGIIK_13710 0.45 +1.4
2,974,399 - OKGIIK_13710 0.45 +0.7
2,974,399 - OKGIIK_13710 0.45 +0.5
2,974,978 + +0.2
2,974,978 + -0.1
2,975,068 - +0.5
2,975,257 - +0.0
2,975,364 + OKGIIK_13715 0.13 +0.8
2,975,364 + OKGIIK_13715 0.13 +0.7
2,975,364 + OKGIIK_13715 0.13 +0.4
2,975,364 + OKGIIK_13715 0.13 +0.3
2,975,364 + OKGIIK_13715 0.13 -0.8
2,975,364 + OKGIIK_13715 0.13 +0.2
2,975,365 - OKGIIK_13715 0.13 +0.8
2,975,365 - OKGIIK_13715 0.13 +0.8
2,975,365 - OKGIIK_13715 0.13 +1.8
2,975,365 - OKGIIK_13715 0.13 +0.2
2,975,365 - OKGIIK_13715 0.13 -1.8
2,975,365 - OKGIIK_13715 0.13 +0.2
2,975,365 - OKGIIK_13715 0.13 -0.0
2,975,470 - OKGIIK_13715 0.17 +0.5
2,975,601 + OKGIIK_13715 0.22 -0.1
2,975,601 + OKGIIK_13715 0.22 -0.8
2,975,601 + OKGIIK_13715 0.22 -0.2
2,975,601 + OKGIIK_13715 0.22 -0.1
2,975,601 + OKGIIK_13715 0.22 -0.3
2,975,601 + OKGIIK_13715 0.22 +0.5
2,975,602 - OKGIIK_13715 0.22 -0.1
2,975,602 - OKGIIK_13715 0.22 -0.7
2,975,602 - OKGIIK_13715 0.22 +0.2
2,975,602 - OKGIIK_13715 0.22 +0.0
2,975,602 - OKGIIK_13715 0.22 -0.3
2,975,602 - OKGIIK_13715 0.22 +0.9
2,975,602 - OKGIIK_13715 0.22 +0.5
2,975,602 - OKGIIK_13715 0.22 -1.6
2,975,603 - OKGIIK_13715 0.22 -1.1
2,975,649 + OKGIIK_13715 0.24 +0.2
2,975,649 + OKGIIK_13715 0.24 -2.0
2,975,649 + OKGIIK_13715 0.24 +0.9
2,975,649 + OKGIIK_13715 0.24 -0.2
2,975,649 + OKGIIK_13715 0.24 -0.8
2,975,650 - OKGIIK_13715 0.24 +0.4
2,975,650 - OKGIIK_13715 0.24 -0.1
2,975,722 - OKGIIK_13715 0.27 +0.2
2,975,722 - OKGIIK_13715 0.27 -0.4
2,975,769 + OKGIIK_13715 0.28 -0.0
2,975,769 + OKGIIK_13715 0.28 -0.0
2,975,770 - OKGIIK_13715 0.28 -1.1
2,975,781 + OKGIIK_13715 0.29 -1.5
2,975,781 + OKGIIK_13715 0.29 +0.5
2,975,781 + OKGIIK_13715 0.29 -0.6
2,975,782 - OKGIIK_13715 0.29 +1.2
2,975,782 - OKGIIK_13715 0.29 -0.6
2,975,782 - OKGIIK_13715 0.29 -0.8
2,975,782 - OKGIIK_13715 0.29 -1.8
2,975,782 - OKGIIK_13715 0.29 -0.1
2,975,910 + OKGIIK_13715 0.34 -0.4
2,975,911 - OKGIIK_13715 0.34 -1.6
2,975,943 + OKGIIK_13715 0.35 -0.8
2,975,943 + OKGIIK_13715 0.35 -0.2
2,975,943 + OKGIIK_13715 0.35 +0.2
2,975,943 + OKGIIK_13715 0.35 -1.3
2,975,944 - OKGIIK_13715 0.35 -1.5
2,975,944 - OKGIIK_13715 0.35 -0.5
2,975,944 - OKGIIK_13715 0.35 -0.5
2,975,944 - OKGIIK_13715 0.35 -1.1
2,975,944 - OKGIIK_13715 0.35 +0.6
2,976,153 + OKGIIK_13715 0.43 -1.4
2,976,153 + OKGIIK_13715 0.43 -0.7
2,976,153 + OKGIIK_13715 0.43 -1.0
2,976,153 + OKGIIK_13715 0.43 -1.5
2,976,154 - OKGIIK_13715 0.43 +0.2
2,976,154 - OKGIIK_13715 0.43 -0.3
2,976,154 - OKGIIK_13715 0.43 +0.4
2,976,154 - OKGIIK_13715 0.43 -0.7
2,976,174 + OKGIIK_13715 0.43 +1.2
2,976,175 - OKGIIK_13715 0.44 -0.5
2,976,175 - OKGIIK_13715 0.44 -0.7
2,976,175 - OKGIIK_13715 0.44 -0.5
2,976,175 - OKGIIK_13715 0.44 -1.8
2,976,189 + OKGIIK_13715 0.44 -0.4
2,976,189 + OKGIIK_13715 0.44 +0.1
2,976,189 + OKGIIK_13715 0.44 +1.2
2,976,190 - OKGIIK_13715 0.44 -0.9
2,976,268 - OKGIIK_13715 0.47 -0.7
2,976,354 + OKGIIK_13715 0.50 -1.1
2,976,354 + OKGIIK_13715 0.50 -0.8
2,976,354 + OKGIIK_13715 0.50 -0.7
2,976,355 - OKGIIK_13715 0.50 +0.9
2,976,355 - OKGIIK_13715 0.50 -0.4
2,976,355 - OKGIIK_13715 0.50 -0.6
2,976,366 + OKGIIK_13715 0.51 +1.9
2,976,367 - OKGIIK_13715 0.51 +0.9
2,976,367 - OKGIIK_13715 0.51 +2.0
2,976,429 + OKGIIK_13715 0.53 -0.7
2,976,429 + OKGIIK_13715 0.53 -0.8
2,976,429 + OKGIIK_13715 0.53 +0.0
2,976,429 + OKGIIK_13715 0.53 -1.4
2,976,429 + OKGIIK_13715 0.53 +1.2
2,976,429 + OKGIIK_13715 0.53 +0.3
2,976,429 + OKGIIK_13715 0.53 +1.2
2,976,430 - OKGIIK_13715 0.53 +0.7
2,976,430 - OKGIIK_13715 0.53 +1.5
2,976,430 - OKGIIK_13715 0.53 -1.8
2,976,430 - OKGIIK_13715 0.53 -1.4
2,976,430 - OKGIIK_13715 0.53 +0.9
2,976,430 - OKGIIK_13715 0.53 +0.9
2,976,696 + OKGIIK_13715 0.63 +0.7
2,976,786 + OKGIIK_13715 0.66 -0.8
2,976,786 + OKGIIK_13715 0.66 +0.7
2,976,787 - OKGIIK_13715 0.66 +0.4
2,977,038 + OKGIIK_13715 0.76 -1.6
2,977,039 - OKGIIK_13715 0.76 +0.2
2,977,039 - OKGIIK_13715 0.76 -1.0
2,977,173 + OKGIIK_13715 0.81 -1.1
2,977,173 + OKGIIK_13715 0.81 +0.1
2,977,174 - OKGIIK_13715 0.81 +1.2
2,977,174 - OKGIIK_13715 0.81 -1.8
2,977,174 - OKGIIK_13715 0.81 +0.4
2,977,174 - OKGIIK_13715 0.81 -1.6
2,977,900 + OKGIIK_13720 0.80 +0.6
2,977,901 - OKGIIK_13720 0.80 -2.4
2,977,901 - OKGIIK_13720 0.80 -0.4
2,977,901 - OKGIIK_13720 0.80 -0.1
2,977,901 - OKGIIK_13720 0.80 -0.3
2,978,018 - -0.5
2,978,018 - +0.9
2,978,113 - +1.5
2,978,137 - -1.1
2,978,137 - -1.6
2,978,137 - -0.2
2,978,183 - +0.7
2,978,183 - -0.4
2,978,183 - -0.5
2,978,183 - -0.4
2,978,183 - +0.5
2,978,233 - +0.1
2,978,233 - -0.3
2,978,233 - +0.5
2,978,233 - +1.1
2,978,233 - -0.3
2,978,233 - +0.4
2,978,233 - +1.0
2,978,233 - -0.1
2,978,233 - -0.3
2,978,233 - +0.2
2,978,233 - -0.1
2,978,233 - +0.7
2,978,554 + +0.1
2,978,555 - +1.0
2,978,555 - -0.3
2,978,555 - +1.0

Or see this region's nucleotide sequence