Experiment: no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OKGIIK_13415 and OKGIIK_13420 are separated by 31 nucleotides OKGIIK_13420 and OKGIIK_13425 are separated by 274 nucleotides OKGIIK_13425 and OKGIIK_13430 overlap by 4 nucleotides
OKGIIK_13415: OKGIIK_13415 - SseB family protein, at 2,896,728 to 2,897,267
_13415
OKGIIK_13420: OKGIIK_13420 - DUF45 domain-containing protein, at 2,897,299 to 2,897,769
_13420
OKGIIK_13425: OKGIIK_13425 - DEAD/DEAH box helicase, at 2,898,044 to 2,901,340
_13425
OKGIIK_13430: OKGIIK_13430 - Methylase-S domain-containing protein, at 2,901,337 to 2,902,584
_13430
Position (kb)
2898
2899
2900
2901
2902 Strain fitness (log2 ratio)
-2
-1
0
1 at 2897.280 kb on - strand at 2897.280 kb on - strand at 2897.280 kb on - strand at 2897.300 kb on + strand at 2897.300 kb on + strand at 2897.300 kb on + strand at 2897.300 kb on + strand at 2897.300 kb on + strand at 2897.301 kb on - strand at 2897.301 kb on - strand at 2897.303 kb on - strand at 2897.303 kb on - strand at 2897.312 kb on - strand at 2897.583 kb on + strand, within OKGIIK_13420 at 2897.584 kb on - strand, within OKGIIK_13420 at 2897.765 kb on + strand at 2897.789 kb on + strand at 2897.803 kb on + strand at 2897.803 kb on + strand at 2897.803 kb on + strand at 2897.803 kb on + strand at 2897.804 kb on - strand at 2897.804 kb on - strand at 2897.814 kb on - strand at 2897.976 kb on + strand at 2897.976 kb on + strand at 2897.976 kb on + strand at 2897.977 kb on - strand at 2897.977 kb on - strand at 2897.981 kb on - strand at 2897.981 kb on - strand at 2897.981 kb on - strand at 2898.008 kb on + strand at 2898.009 kb on - strand at 2898.009 kb on - strand at 2898.056 kb on + strand at 2898.218 kb on + strand at 2898.219 kb on - strand at 2898.219 kb on - strand at 2898.312 kb on + strand at 2898.405 kb on + strand, within OKGIIK_13425 at 2898.406 kb on - strand, within OKGIIK_13425 at 2898.406 kb on - strand, within OKGIIK_13425 at 2898.486 kb on + strand, within OKGIIK_13425 at 2898.538 kb on + strand, within OKGIIK_13425 at 2898.615 kb on + strand, within OKGIIK_13425 at 2898.615 kb on + strand, within OKGIIK_13425 at 2898.615 kb on + strand, within OKGIIK_13425 at 2898.615 kb on + strand, within OKGIIK_13425 at 2898.615 kb on + strand, within OKGIIK_13425 at 2898.687 kb on + strand, within OKGIIK_13425 at 2898.696 kb on + strand, within OKGIIK_13425 at 2898.696 kb on + strand, within OKGIIK_13425 at 2898.697 kb on - strand, within OKGIIK_13425 at 2898.697 kb on - strand, within OKGIIK_13425 at 2898.768 kb on + strand, within OKGIIK_13425 at 2898.769 kb on - strand, within OKGIIK_13425 at 2898.900 kb on + strand, within OKGIIK_13425 at 2898.900 kb on + strand, within OKGIIK_13425 at 2898.901 kb on - strand, within OKGIIK_13425 at 2899.030 kb on - strand, within OKGIIK_13425 at 2899.030 kb on - strand, within OKGIIK_13425 at 2899.050 kb on + strand, within OKGIIK_13425 at 2899.050 kb on + strand, within OKGIIK_13425 at 2899.050 kb on + strand, within OKGIIK_13425 at 2899.077 kb on + strand, within OKGIIK_13425 at 2899.110 kb on + strand, within OKGIIK_13425 at 2899.110 kb on + strand, within OKGIIK_13425 at 2899.111 kb on - strand, within OKGIIK_13425 at 2899.153 kb on - strand, within OKGIIK_13425 at 2899.153 kb on - strand, within OKGIIK_13425 at 2899.248 kb on + strand, within OKGIIK_13425 at 2899.248 kb on + strand, within OKGIIK_13425 at 2899.248 kb on + strand, within OKGIIK_13425 at 2899.248 kb on + strand, within OKGIIK_13425 at 2899.249 kb on - strand, within OKGIIK_13425 at 2899.249 kb on - strand, within OKGIIK_13425 at 2899.249 kb on - strand, within OKGIIK_13425 at 2899.283 kb on - strand, within OKGIIK_13425 at 2899.283 kb on - strand, within OKGIIK_13425 at 2899.357 kb on - strand, within OKGIIK_13425 at 2899.457 kb on - strand, within OKGIIK_13425 at 2899.488 kb on - strand, within OKGIIK_13425 at 2899.518 kb on + strand, within OKGIIK_13425 at 2899.519 kb on - strand, within OKGIIK_13425 at 2899.647 kb on + strand, within OKGIIK_13425 at 2899.648 kb on - strand, within OKGIIK_13425 at 2899.648 kb on - strand, within OKGIIK_13425 at 2899.828 kb on - strand, within OKGIIK_13425 at 2899.828 kb on - strand, within OKGIIK_13425 at 2899.902 kb on + strand, within OKGIIK_13425 at 2899.902 kb on + strand, within OKGIIK_13425 at 2899.902 kb on + strand, within OKGIIK_13425 at 2899.902 kb on + strand, within OKGIIK_13425 at 2899.902 kb on + strand, within OKGIIK_13425 at 2899.902 kb on + strand, within OKGIIK_13425 at 2899.902 kb on + strand, within OKGIIK_13425 at 2899.903 kb on - strand, within OKGIIK_13425 at 2899.903 kb on - strand, within OKGIIK_13425 at 2899.903 kb on - strand, within OKGIIK_13425 at 2899.903 kb on - strand, within OKGIIK_13425 at 2899.958 kb on - strand, within OKGIIK_13425 at 2900.116 kb on + strand, within OKGIIK_13425 at 2900.116 kb on + strand, within OKGIIK_13425 at 2900.116 kb on + strand, within OKGIIK_13425 at 2900.116 kb on + strand, within OKGIIK_13425 at 2900.116 kb on + strand, within OKGIIK_13425 at 2900.116 kb on + strand, within OKGIIK_13425 at 2900.116 kb on + strand, within OKGIIK_13425 at 2900.117 kb on - strand, within OKGIIK_13425 at 2900.117 kb on - strand, within OKGIIK_13425 at 2900.117 kb on - strand, within OKGIIK_13425 at 2900.117 kb on - strand, within OKGIIK_13425 at 2900.131 kb on + strand, within OKGIIK_13425 at 2900.131 kb on + strand, within OKGIIK_13425 at 2900.132 kb on - strand, within OKGIIK_13425 at 2900.132 kb on - strand, within OKGIIK_13425 at 2900.278 kb on + strand, within OKGIIK_13425 at 2900.279 kb on - strand, within OKGIIK_13425 at 2900.279 kb on - strand, within OKGIIK_13425 at 2900.279 kb on - strand, within OKGIIK_13425 at 2900.395 kb on - strand, within OKGIIK_13425 at 2900.585 kb on - strand, within OKGIIK_13425 at 2900.674 kb on + strand, within OKGIIK_13425 at 2900.674 kb on + strand, within OKGIIK_13425 at 2900.674 kb on + strand, within OKGIIK_13425 at 2900.675 kb on - strand, within OKGIIK_13425 at 2900.675 kb on - strand, within OKGIIK_13425 at 2900.675 kb on - strand, within OKGIIK_13425 at 2900.675 kb on - strand, within OKGIIK_13425 at 2900.675 kb on - strand, within OKGIIK_13425 at 2900.675 kb on - strand, within OKGIIK_13425 at 2900.731 kb on - strand, within OKGIIK_13425 at 2900.731 kb on - strand, within OKGIIK_13425 at 2900.868 kb on + strand, within OKGIIK_13425 at 2900.869 kb on - strand, within OKGIIK_13425 at 2900.869 kb on - strand, within OKGIIK_13425 at 2900.869 kb on - strand, within OKGIIK_13425 at 2900.878 kb on + strand, within OKGIIK_13425 at 2901.039 kb on - strand at 2901.048 kb on + strand at 2901.048 kb on + strand at 2901.049 kb on - strand at 2901.156 kb on + strand at 2901.157 kb on - strand at 2901.157 kb on - strand at 2901.157 kb on - strand at 2901.256 kb on - strand at 2901.276 kb on - strand at 2901.523 kb on + strand, within OKGIIK_13430 at 2901.523 kb on + strand, within OKGIIK_13430 at 2901.523 kb on + strand, within OKGIIK_13430 at 2901.632 kb on + strand, within OKGIIK_13430 at 2901.633 kb on - strand, within OKGIIK_13430 at 2901.633 kb on - strand, within OKGIIK_13430 at 2901.633 kb on - strand, within OKGIIK_13430 at 2901.689 kb on + strand, within OKGIIK_13430 at 2901.690 kb on - strand, within OKGIIK_13430 at 2901.690 kb on - strand, within OKGIIK_13430 at 2901.717 kb on - strand, within OKGIIK_13430 at 2901.749 kb on + strand, within OKGIIK_13430 at 2901.761 kb on + strand, within OKGIIK_13430 at 2901.761 kb on + strand, within OKGIIK_13430 at 2901.762 kb on - strand, within OKGIIK_13430 at 2901.773 kb on + strand, within OKGIIK_13430 at 2901.773 kb on + strand, within OKGIIK_13430 at 2901.774 kb on - strand, within OKGIIK_13430 at 2901.793 kb on + strand, within OKGIIK_13430 at 2901.794 kb on - strand, within OKGIIK_13430 at 2901.804 kb on - strand, within OKGIIK_13430 at 2901.804 kb on - strand, within OKGIIK_13430 at 2901.804 kb on - strand, within OKGIIK_13430 at 2901.804 kb on - strand, within OKGIIK_13430 at 2901.817 kb on + strand, within OKGIIK_13430 at 2901.817 kb on + strand, within OKGIIK_13430 at 2901.817 kb on + strand, within OKGIIK_13430 at 2901.817 kb on + strand, within OKGIIK_13430 at 2901.817 kb on + strand, within OKGIIK_13430 at 2901.818 kb on - strand, within OKGIIK_13430 at 2901.818 kb on - strand, within OKGIIK_13430 at 2901.856 kb on - strand, within OKGIIK_13430 at 2901.912 kb on + strand, within OKGIIK_13430 at 2901.913 kb on - strand, within OKGIIK_13430 at 2901.913 kb on - strand, within OKGIIK_13430 at 2901.913 kb on - strand, within OKGIIK_13430 at 2901.972 kb on + strand, within OKGIIK_13430 at 2901.972 kb on + strand, within OKGIIK_13430 at 2901.972 kb on + strand, within OKGIIK_13430 at 2901.973 kb on - strand, within OKGIIK_13430 at 2901.973 kb on - strand, within OKGIIK_13430 at 2902.123 kb on + strand, within OKGIIK_13430 at 2902.124 kb on - strand, within OKGIIK_13430 at 2902.124 kb on - strand, within OKGIIK_13430 at 2902.124 kb on - strand, within OKGIIK_13430 at 2902.124 kb on - strand, within OKGIIK_13430 at 2902.124 kb on - strand, within OKGIIK_13430 at 2902.124 kb on - strand, within OKGIIK_13430 at 2902.124 kb on - strand, within OKGIIK_13430 at 2902.126 kb on + strand, within OKGIIK_13430 at 2902.199 kb on + strand, within OKGIIK_13430 at 2902.199 kb on + strand, within OKGIIK_13430 at 2902.200 kb on - strand, within OKGIIK_13430 at 2902.200 kb on - strand, within OKGIIK_13430 at 2902.211 kb on + strand, within OKGIIK_13430
Per-strain Table
Position Strand Gene LocusTag Fraction no stress control remove 2,897,280 - -1.1 2,897,280 - -0.6 2,897,280 - +1.2 2,897,300 + -1.1 2,897,300 + +0.1 2,897,300 + +0.7 2,897,300 + +0.1 2,897,300 + -0.5 2,897,301 - +0.7 2,897,301 - -0.2 2,897,303 - -2.1 2,897,303 - +0.2 2,897,312 - -0.4 2,897,583 + OKGIIK_13420 0.60 -2.2 2,897,584 - OKGIIK_13420 0.61 -0.9 2,897,765 + -0.4 2,897,789 + +0.2 2,897,803 + -1.9 2,897,803 + -1.6 2,897,803 + -0.4 2,897,803 + +0.9 2,897,804 - -1.6 2,897,804 - -0.2 2,897,814 - -0.7 2,897,976 + -0.4 2,897,976 + -0.4 2,897,976 + +0.8 2,897,977 - -1.4 2,897,977 - -1.8 2,897,981 - +0.4 2,897,981 - -0.2 2,897,981 - +0.7 2,898,008 + -0.5 2,898,009 - -0.9 2,898,009 - +0.9 2,898,056 + -1.9 2,898,218 + +0.6 2,898,219 - -1.4 2,898,219 - +0.2 2,898,312 + +0.5 2,898,405 + OKGIIK_13425 0.11 -0.2 2,898,406 - OKGIIK_13425 0.11 -0.5 2,898,406 - OKGIIK_13425 0.11 +1.4 2,898,486 + OKGIIK_13425 0.13 -0.4 2,898,538 + OKGIIK_13425 0.15 +0.9 2,898,615 + OKGIIK_13425 0.17 -1.7 2,898,615 + OKGIIK_13425 0.17 +0.6 2,898,615 + OKGIIK_13425 0.17 +0.2 2,898,615 + OKGIIK_13425 0.17 +0.6 2,898,615 + OKGIIK_13425 0.17 -2.1 2,898,687 + OKGIIK_13425 0.20 +0.4 2,898,696 + OKGIIK_13425 0.20 +0.9 2,898,696 + OKGIIK_13425 0.20 +0.7 2,898,697 - OKGIIK_13425 0.20 +1.2 2,898,697 - OKGIIK_13425 0.20 -1.2 2,898,768 + OKGIIK_13425 0.22 +1.2 2,898,769 - OKGIIK_13425 0.22 -1.1 2,898,900 + OKGIIK_13425 0.26 -0.1 2,898,900 + OKGIIK_13425 0.26 +0.1 2,898,901 - OKGIIK_13425 0.26 -1.1 2,899,030 - OKGIIK_13425 0.30 -1.1 2,899,030 - OKGIIK_13425 0.30 -0.8 2,899,050 + OKGIIK_13425 0.31 -0.6 2,899,050 + OKGIIK_13425 0.31 -1.4 2,899,050 + OKGIIK_13425 0.31 -1.1 2,899,077 + OKGIIK_13425 0.31 -0.6 2,899,110 + OKGIIK_13425 0.32 +0.6 2,899,110 + OKGIIK_13425 0.32 -1.8 2,899,111 - OKGIIK_13425 0.32 -1.8 2,899,153 - OKGIIK_13425 0.34 +0.2 2,899,153 - OKGIIK_13425 0.34 -0.8 2,899,248 + OKGIIK_13425 0.37 -0.8 2,899,248 + OKGIIK_13425 0.37 -0.9 2,899,248 + OKGIIK_13425 0.37 -0.8 2,899,248 + OKGIIK_13425 0.37 +0.1 2,899,249 - OKGIIK_13425 0.37 -0.8 2,899,249 - OKGIIK_13425 0.37 -1.1 2,899,249 - OKGIIK_13425 0.37 -0.2 2,899,283 - OKGIIK_13425 0.38 -1.9 2,899,283 - OKGIIK_13425 0.38 -0.1 2,899,357 - OKGIIK_13425 0.40 +0.8 2,899,457 - OKGIIK_13425 0.43 -1.1 2,899,488 - OKGIIK_13425 0.44 -2.2 2,899,518 + OKGIIK_13425 0.45 +0.2 2,899,519 - OKGIIK_13425 0.45 +0.2 2,899,647 + OKGIIK_13425 0.49 +0.6 2,899,648 - OKGIIK_13425 0.49 +1.3 2,899,648 - OKGIIK_13425 0.49 -0.7 2,899,828 - OKGIIK_13425 0.54 -1.8 2,899,828 - OKGIIK_13425 0.54 -0.1 2,899,902 + OKGIIK_13425 0.56 +1.0 2,899,902 + OKGIIK_13425 0.56 +1.2 2,899,902 + OKGIIK_13425 0.56 -0.9 2,899,902 + OKGIIK_13425 0.56 +0.7 2,899,902 + OKGIIK_13425 0.56 -0.8 2,899,902 + OKGIIK_13425 0.56 -0.1 2,899,902 + OKGIIK_13425 0.56 +0.9 2,899,903 - OKGIIK_13425 0.56 -0.9 2,899,903 - OKGIIK_13425 0.56 -0.6 2,899,903 - OKGIIK_13425 0.56 -0.9 2,899,903 - OKGIIK_13425 0.56 +1.0 2,899,958 - OKGIIK_13425 0.58 +1.4 2,900,116 + OKGIIK_13425 0.63 -0.8 2,900,116 + OKGIIK_13425 0.63 -0.1 2,900,116 + OKGIIK_13425 0.63 -1.8 2,900,116 + OKGIIK_13425 0.63 -0.2 2,900,116 + OKGIIK_13425 0.63 -0.1 2,900,116 + OKGIIK_13425 0.63 -0.5 2,900,116 + OKGIIK_13425 0.63 -0.2 2,900,117 - OKGIIK_13425 0.63 +0.5 2,900,117 - OKGIIK_13425 0.63 -0.1 2,900,117 - OKGIIK_13425 0.63 +0.0 2,900,117 - OKGIIK_13425 0.63 -0.4 2,900,131 + OKGIIK_13425 0.63 +0.7 2,900,131 + OKGIIK_13425 0.63 +0.1 2,900,132 - OKGIIK_13425 0.63 +0.1 2,900,132 - OKGIIK_13425 0.63 +0.2 2,900,278 + OKGIIK_13425 0.68 -0.4 2,900,279 - OKGIIK_13425 0.68 -0.0 2,900,279 - OKGIIK_13425 0.68 +0.3 2,900,279 - OKGIIK_13425 0.68 -0.6 2,900,395 - OKGIIK_13425 0.71 -0.1 2,900,585 - OKGIIK_13425 0.77 +0.2 2,900,674 + OKGIIK_13425 0.80 -0.4 2,900,674 + OKGIIK_13425 0.80 -0.3 2,900,674 + OKGIIK_13425 0.80 -2.5 2,900,675 - OKGIIK_13425 0.80 -0.4 2,900,675 - OKGIIK_13425 0.80 +0.9 2,900,675 - OKGIIK_13425 0.80 -1.0 2,900,675 - OKGIIK_13425 0.80 -2.4 2,900,675 - OKGIIK_13425 0.80 -1.4 2,900,675 - OKGIIK_13425 0.80 +1.0 2,900,731 - OKGIIK_13425 0.81 -1.1 2,900,731 - OKGIIK_13425 0.81 +1.7 2,900,868 + OKGIIK_13425 0.86 -2.2 2,900,869 - OKGIIK_13425 0.86 +0.1 2,900,869 - OKGIIK_13425 0.86 +1.4 2,900,869 - OKGIIK_13425 0.86 -0.8 2,900,878 + OKGIIK_13425 0.86 -0.6 2,901,039 - +0.6 2,901,048 + +0.9 2,901,048 + +0.8 2,901,049 - -0.6 2,901,156 + -1.1 2,901,157 - +0.6 2,901,157 - -0.3 2,901,157 - +1.5 2,901,256 - +0.1 2,901,276 - -1.4 2,901,523 + OKGIIK_13430 0.15 -1.0 2,901,523 + OKGIIK_13430 0.15 -2.4 2,901,523 + OKGIIK_13430 0.15 -0.8 2,901,632 + OKGIIK_13430 0.24 -0.2 2,901,633 - OKGIIK_13430 0.24 +1.5 2,901,633 - OKGIIK_13430 0.24 -2.2 2,901,633 - OKGIIK_13430 0.24 -2.5 2,901,689 + OKGIIK_13430 0.28 -1.2 2,901,690 - OKGIIK_13430 0.28 -2.4 2,901,690 - OKGIIK_13430 0.28 -1.1 2,901,717 - OKGIIK_13430 0.30 -0.8 2,901,749 + OKGIIK_13430 0.33 -0.8 2,901,761 + OKGIIK_13430 0.34 +0.6 2,901,761 + OKGIIK_13430 0.34 -1.6 2,901,762 - OKGIIK_13430 0.34 +0.1 2,901,773 + OKGIIK_13430 0.35 +0.1 2,901,773 + OKGIIK_13430 0.35 -0.2 2,901,774 - OKGIIK_13430 0.35 -0.4 2,901,793 + OKGIIK_13430 0.37 -0.4 2,901,794 - OKGIIK_13430 0.37 +0.2 2,901,804 - OKGIIK_13430 0.37 +0.5 2,901,804 - OKGIIK_13430 0.37 -1.8 2,901,804 - OKGIIK_13430 0.37 -0.7 2,901,804 - OKGIIK_13430 0.37 -0.1 2,901,817 + OKGIIK_13430 0.38 -0.0 2,901,817 + OKGIIK_13430 0.38 -1.4 2,901,817 + OKGIIK_13430 0.38 +1.5 2,901,817 + OKGIIK_13430 0.38 +0.8 2,901,817 + OKGIIK_13430 0.38 -1.3 2,901,818 - OKGIIK_13430 0.39 -0.1 2,901,818 - OKGIIK_13430 0.39 +0.1 2,901,856 - OKGIIK_13430 0.42 +0.1 2,901,912 + OKGIIK_13430 0.46 -0.3 2,901,913 - OKGIIK_13430 0.46 -2.5 2,901,913 - OKGIIK_13430 0.46 -0.3 2,901,913 - OKGIIK_13430 0.46 -1.3 2,901,972 + OKGIIK_13430 0.51 -0.6 2,901,972 + OKGIIK_13430 0.51 -0.6 2,901,972 + OKGIIK_13430 0.51 +1.0 2,901,973 - OKGIIK_13430 0.51 -0.0 2,901,973 - OKGIIK_13430 0.51 +0.6 2,902,123 + OKGIIK_13430 0.63 +0.1 2,902,124 - OKGIIK_13430 0.63 -0.2 2,902,124 - OKGIIK_13430 0.63 +0.2 2,902,124 - OKGIIK_13430 0.63 -1.4 2,902,124 - OKGIIK_13430 0.63 -1.3 2,902,124 - OKGIIK_13430 0.63 +0.3 2,902,124 - OKGIIK_13430 0.63 -0.4 2,902,124 - OKGIIK_13430 0.63 -0.9 2,902,126 + OKGIIK_13430 0.63 -0.6 2,902,199 + OKGIIK_13430 0.69 -1.1 2,902,199 + OKGIIK_13430 0.69 -0.4 2,902,200 - OKGIIK_13430 0.69 -2.1 2,902,200 - OKGIIK_13430 0.69 -0.0 2,902,211 + OKGIIK_13430 0.70 +0.3
Or see this region's nucleotide sequence