Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_16975

Experiment: R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntthiC and OKGIIK_16970 are separated by 109 nucleotidesOKGIIK_16970 and qor are separated by 15 nucleotidesqor and ppa are separated by 309 nucleotidesppa and OKGIIK_16985 are separated by 96 nucleotides OKGIIK_16965: thiC - phosphomethylpyrimidine synthase ThiC, at 3,722,741 to 3,724,618 thiC OKGIIK_16970: OKGIIK_16970 - Bacterioferritin, at 3,724,728 to 3,725,324 _16970 OKGIIK_16975: qor - zinc-binding alcohol dehydrogenase family protein, at 3,725,340 to 3,726,356 qor OKGIIK_16980: ppa - inorganic diphosphatase, at 3,726,666 to 3,727,205 ppa OKGIIK_16985: OKGIIK_16985 - Proline dioxygenase, at 3,727,302 to 3,728,156 _16985 Position (kb) 3725 3726 3727Strain fitness (log2 ratio) -3 -2 -1 0 1at 3724.604 kb on + strandat 3724.604 kb on + strandat 3724.692 kb on + strandat 3724.693 kb on - strandat 3724.893 kb on + strand, within OKGIIK_16970at 3724.893 kb on + strand, within OKGIIK_16970at 3724.894 kb on - strand, within OKGIIK_16970at 3724.894 kb on - strand, within OKGIIK_16970at 3724.899 kb on + strand, within OKGIIK_16970at 3724.899 kb on + strand, within OKGIIK_16970at 3724.899 kb on + strand, within OKGIIK_16970at 3724.899 kb on + strand, within OKGIIK_16970at 3724.899 kb on + strand, within OKGIIK_16970at 3724.899 kb on + strand, within OKGIIK_16970at 3724.899 kb on + strand, within OKGIIK_16970at 3724.899 kb on + strand, within OKGIIK_16970at 3724.899 kb on + strand, within OKGIIK_16970at 3724.899 kb on + strand, within OKGIIK_16970at 3724.900 kb on - strand, within OKGIIK_16970at 3724.900 kb on - strand, within OKGIIK_16970at 3724.900 kb on - strand, within OKGIIK_16970at 3724.900 kb on - strand, within OKGIIK_16970at 3724.905 kb on + strand, within OKGIIK_16970at 3724.905 kb on + strand, within OKGIIK_16970at 3724.905 kb on + strand, within OKGIIK_16970at 3724.905 kb on + strand, within OKGIIK_16970at 3724.906 kb on - strand, within OKGIIK_16970at 3724.906 kb on - strand, within OKGIIK_16970at 3724.906 kb on - strand, within OKGIIK_16970at 3724.906 kb on - strand, within OKGIIK_16970at 3724.906 kb on - strand, within OKGIIK_16970at 3724.906 kb on - strand, within OKGIIK_16970at 3724.906 kb on - strand, within OKGIIK_16970at 3724.908 kb on + strand, within OKGIIK_16970at 3724.908 kb on + strand, within OKGIIK_16970at 3724.908 kb on + strand, within OKGIIK_16970at 3724.908 kb on + strand, within OKGIIK_16970at 3724.908 kb on + strand, within OKGIIK_16970at 3724.908 kb on + strand, within OKGIIK_16970at 3724.908 kb on + strand, within OKGIIK_16970at 3724.908 kb on + strand, within OKGIIK_16970at 3724.908 kb on + strand, within OKGIIK_16970at 3724.908 kb on + strand, within OKGIIK_16970at 3724.908 kb on + strand, within OKGIIK_16970at 3724.908 kb on + strand, within OKGIIK_16970at 3724.908 kb on + strand, within OKGIIK_16970at 3724.908 kb on + strand, within OKGIIK_16970at 3724.908 kb on + strand, within OKGIIK_16970at 3724.908 kb on + strand, within OKGIIK_16970at 3724.908 kb on + strand, within OKGIIK_16970at 3724.908 kb on + strand, within OKGIIK_16970at 3724.908 kb on + strand, within OKGIIK_16970at 3724.908 kb on + strand, within OKGIIK_16970at 3724.908 kb on + strand, within OKGIIK_16970at 3724.908 kb on + strand, within OKGIIK_16970at 3724.908 kb on + strand, within OKGIIK_16970at 3724.908 kb on + strand, within OKGIIK_16970at 3724.908 kb on + strand, within OKGIIK_16970at 3724.908 kb on + strand, within OKGIIK_16970at 3724.908 kb on + strand, within OKGIIK_16970at 3724.908 kb on + strand, within OKGIIK_16970at 3724.909 kb on - strand, within OKGIIK_16970at 3724.909 kb on - strand, within OKGIIK_16970at 3724.909 kb on - strand, within OKGIIK_16970at 3724.909 kb on - strand, within OKGIIK_16970at 3724.909 kb on - strand, within OKGIIK_16970at 3724.909 kb on - strand, within OKGIIK_16970at 3724.909 kb on - strand, within OKGIIK_16970at 3724.909 kb on - strand, within OKGIIK_16970at 3724.909 kb on - strand, within OKGIIK_16970at 3724.909 kb on - strand, within OKGIIK_16970at 3724.909 kb on - strand, within OKGIIK_16970at 3724.909 kb on - strand, within OKGIIK_16970at 3724.909 kb on - strand, within OKGIIK_16970at 3724.909 kb on - strand, within OKGIIK_16970at 3724.909 kb on - strand, within OKGIIK_16970at 3724.909 kb on - strand, within OKGIIK_16970at 3724.909 kb on - strand, within OKGIIK_16970at 3724.909 kb on - strand, within OKGIIK_16970at 3724.909 kb on - strand, within OKGIIK_16970at 3724.909 kb on - strand, within OKGIIK_16970at 3724.909 kb on - strand, within OKGIIK_16970at 3724.909 kb on - strand, within OKGIIK_16970at 3725.070 kb on + strand, within OKGIIK_16970at 3725.071 kb on - strand, within OKGIIK_16970at 3725.071 kb on - strand, within OKGIIK_16970at 3725.142 kb on + strand, within OKGIIK_16970at 3725.142 kb on + strand, within OKGIIK_16970at 3725.143 kb on - strand, within OKGIIK_16970at 3725.160 kb on + strand, within OKGIIK_16970at 3725.160 kb on + strand, within OKGIIK_16970at 3725.160 kb on + strand, within OKGIIK_16970at 3725.160 kb on + strand, within OKGIIK_16970at 3725.161 kb on - strand, within OKGIIK_16970at 3725.161 kb on - strand, within OKGIIK_16970at 3725.161 kb on - strand, within OKGIIK_16970at 3725.161 kb on - strand, within OKGIIK_16970at 3725.161 kb on - strand, within OKGIIK_16970at 3725.161 kb on - strand, within OKGIIK_16970at 3725.581 kb on + strand, within qorat 3725.581 kb on + strand, within qorat 3725.581 kb on + strand, within qorat 3725.581 kb on + strand, within qorat 3725.582 kb on - strand, within qorat 3725.582 kb on - strand, within qorat 3725.582 kb on - strand, within qorat 3725.582 kb on - strand, within qorat 3725.582 kb on - strand, within qorat 3725.582 kb on - strand, within qorat 3725.582 kb on - strand, within qorat 3725.582 kb on - strand, within qorat 3725.671 kb on + strand, within qorat 3725.672 kb on - strand, within qorat 3725.672 kb on - strand, within qorat 3725.672 kb on - strand, within qorat 3725.672 kb on - strand, within qorat 3726.091 kb on + strand, within qorat 3726.092 kb on - strand, within qorat 3726.092 kb on - strand, within qorat 3726.092 kb on - strand, within qorat 3726.092 kb on - strand, within qorat 3726.092 kb on - strand, within qorat 3726.094 kb on + strand, within qorat 3726.094 kb on + strand, within qorat 3726.094 kb on + strand, within qorat 3726.094 kb on + strand, within qorat 3726.094 kb on + strand, within qorat 3726.094 kb on + strand, within qorat 3726.094 kb on + strand, within qorat 3726.094 kb on + strand, within qorat 3726.095 kb on - strand, within qorat 3726.095 kb on - strand, within qorat 3726.095 kb on - strand, within qorat 3726.095 kb on - strand, within qorat 3726.095 kb on - strand, within qorat 3726.095 kb on - strand, within qorat 3726.095 kb on - strand, within qorat 3726.095 kb on - strand, within qorat 3726.095 kb on - strand, within qorat 3726.095 kb on - strand, within qorat 3726.095 kb on - strand, within qorat 3726.095 kb on - strand, within qorat 3726.163 kb on + strand, within qorat 3726.164 kb on - strand, within qorat 3726.331 kb on + strandat 3726.332 kb on - strandat 3726.332 kb on - strandat 3726.332 kb on - strandat 3726.447 kb on - strandat 3726.536 kb on + strandat 3726.536 kb on + strandat 3726.536 kb on + strandat 3726.536 kb on + strandat 3726.537 kb on - strandat 3726.537 kb on - strandat 3726.537 kb on - strandat 3726.537 kb on - strandat 3726.537 kb on - strandat 3726.537 kb on - strandat 3726.537 kb on - strandat 3726.537 kb on - strandat 3727.251 kb on - strandat 3727.324 kb on + strandat 3727.324 kb on + strandat 3727.324 kb on + strandat 3727.324 kb on + strandat 3727.324 kb on + strandat 3727.325 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
remove
3,724,604 + -1.6
3,724,604 + -1.8
3,724,692 + -0.4
3,724,693 - +1.6
3,724,893 + OKGIIK_16970 0.28 -1.2
3,724,893 + OKGIIK_16970 0.28 -0.6
3,724,894 - OKGIIK_16970 0.28 +0.2
3,724,894 - OKGIIK_16970 0.28 -0.2
3,724,899 + OKGIIK_16970 0.29 -1.6
3,724,899 + OKGIIK_16970 0.29 -1.6
3,724,899 + OKGIIK_16970 0.29 +0.3
3,724,899 + OKGIIK_16970 0.29 +0.9
3,724,899 + OKGIIK_16970 0.29 -0.1
3,724,899 + OKGIIK_16970 0.29 +0.5
3,724,899 + OKGIIK_16970 0.29 -0.6
3,724,899 + OKGIIK_16970 0.29 -0.0
3,724,899 + OKGIIK_16970 0.29 -2.9
3,724,899 + OKGIIK_16970 0.29 +0.1
3,724,900 - OKGIIK_16970 0.29 +0.8
3,724,900 - OKGIIK_16970 0.29 +1.4
3,724,900 - OKGIIK_16970 0.29 +1.4
3,724,900 - OKGIIK_16970 0.29 -0.1
3,724,905 + OKGIIK_16970 0.30 +0.6
3,724,905 + OKGIIK_16970 0.30 +0.1
3,724,905 + OKGIIK_16970 0.30 -0.9
3,724,905 + OKGIIK_16970 0.30 -1.4
3,724,906 - OKGIIK_16970 0.30 +1.1
3,724,906 - OKGIIK_16970 0.30 -1.1
3,724,906 - OKGIIK_16970 0.30 +0.8
3,724,906 - OKGIIK_16970 0.30 -0.2
3,724,906 - OKGIIK_16970 0.30 -0.5
3,724,906 - OKGIIK_16970 0.30 -0.6
3,724,906 - OKGIIK_16970 0.30 +0.4
3,724,908 + OKGIIK_16970 0.30 +1.4
3,724,908 + OKGIIK_16970 0.30 -1.1
3,724,908 + OKGIIK_16970 0.30 +0.1
3,724,908 + OKGIIK_16970 0.30 -1.2
3,724,908 + OKGIIK_16970 0.30 -0.7
3,724,908 + OKGIIK_16970 0.30 +0.9
3,724,908 + OKGIIK_16970 0.30 -1.1
3,724,908 + OKGIIK_16970 0.30 -1.4
3,724,908 + OKGIIK_16970 0.30 -1.1
3,724,908 + OKGIIK_16970 0.30 -0.8
3,724,908 + OKGIIK_16970 0.30 +0.8
3,724,908 + OKGIIK_16970 0.30 +1.1
3,724,908 + OKGIIK_16970 0.30 -0.4
3,724,908 + OKGIIK_16970 0.30 -0.2
3,724,908 + OKGIIK_16970 0.30 -3.0
3,724,908 + OKGIIK_16970 0.30 -1.6
3,724,908 + OKGIIK_16970 0.30 +0.5
3,724,908 + OKGIIK_16970 0.30 +0.3
3,724,908 + OKGIIK_16970 0.30 -0.2
3,724,908 + OKGIIK_16970 0.30 -1.9
3,724,908 + OKGIIK_16970 0.30 +0.4
3,724,908 + OKGIIK_16970 0.30 +0.7
3,724,908 + OKGIIK_16970 0.30 -0.4
3,724,908 + OKGIIK_16970 0.30 -0.8
3,724,908 + OKGIIK_16970 0.30 +0.9
3,724,908 + OKGIIK_16970 0.30 -2.1
3,724,908 + OKGIIK_16970 0.30 -0.4
3,724,908 + OKGIIK_16970 0.30 +0.6
3,724,909 - OKGIIK_16970 0.30 +1.4
3,724,909 - OKGIIK_16970 0.30 -1.7
3,724,909 - OKGIIK_16970 0.30 -0.3
3,724,909 - OKGIIK_16970 0.30 +0.4
3,724,909 - OKGIIK_16970 0.30 -0.6
3,724,909 - OKGIIK_16970 0.30 +1.0
3,724,909 - OKGIIK_16970 0.30 +0.0
3,724,909 - OKGIIK_16970 0.30 +0.8
3,724,909 - OKGIIK_16970 0.30 -0.1
3,724,909 - OKGIIK_16970 0.30 -1.1
3,724,909 - OKGIIK_16970 0.30 -0.1
3,724,909 - OKGIIK_16970 0.30 +0.5
3,724,909 - OKGIIK_16970 0.30 -0.4
3,724,909 - OKGIIK_16970 0.30 -0.4
3,724,909 - OKGIIK_16970 0.30 -0.4
3,724,909 - OKGIIK_16970 0.30 -0.1
3,724,909 - OKGIIK_16970 0.30 +0.2
3,724,909 - OKGIIK_16970 0.30 +0.9
3,724,909 - OKGIIK_16970 0.30 -0.5
3,724,909 - OKGIIK_16970 0.30 -2.6
3,724,909 - OKGIIK_16970 0.30 +0.6
3,724,909 - OKGIIK_16970 0.30 -1.2
3,725,070 + OKGIIK_16970 0.57 +0.1
3,725,071 - OKGIIK_16970 0.57 +0.4
3,725,071 - OKGIIK_16970 0.57 +0.0
3,725,142 + OKGIIK_16970 0.69 +0.0
3,725,142 + OKGIIK_16970 0.69 -0.7
3,725,143 - OKGIIK_16970 0.70 +0.9
3,725,160 + OKGIIK_16970 0.72 +0.5
3,725,160 + OKGIIK_16970 0.72 -0.1
3,725,160 + OKGIIK_16970 0.72 +0.9
3,725,160 + OKGIIK_16970 0.72 +0.2
3,725,161 - OKGIIK_16970 0.73 -0.1
3,725,161 - OKGIIK_16970 0.73 -3.4
3,725,161 - OKGIIK_16970 0.73 +1.0
3,725,161 - OKGIIK_16970 0.73 -0.9
3,725,161 - OKGIIK_16970 0.73 +0.6
3,725,161 - OKGIIK_16970 0.73 +0.1
3,725,581 + qor OKGIIK_16975 0.24 +0.2
3,725,581 + qor OKGIIK_16975 0.24 -0.6
3,725,581 + qor OKGIIK_16975 0.24 -0.4
3,725,581 + qor OKGIIK_16975 0.24 +0.3
3,725,582 - qor OKGIIK_16975 0.24 -0.6
3,725,582 - qor OKGIIK_16975 0.24 +0.5
3,725,582 - qor OKGIIK_16975 0.24 +0.1
3,725,582 - qor OKGIIK_16975 0.24 -1.6
3,725,582 - qor OKGIIK_16975 0.24 -2.9
3,725,582 - qor OKGIIK_16975 0.24 -0.2
3,725,582 - qor OKGIIK_16975 0.24 -0.3
3,725,582 - qor OKGIIK_16975 0.24 -1.0
3,725,671 + qor OKGIIK_16975 0.33 -0.4
3,725,672 - qor OKGIIK_16975 0.33 +0.2
3,725,672 - qor OKGIIK_16975 0.33 -1.8
3,725,672 - qor OKGIIK_16975 0.33 -1.6
3,725,672 - qor OKGIIK_16975 0.33 -0.5
3,726,091 + qor OKGIIK_16975 0.74 +0.6
3,726,092 - qor OKGIIK_16975 0.74 -1.7
3,726,092 - qor OKGIIK_16975 0.74 -1.1
3,726,092 - qor OKGIIK_16975 0.74 +0.4
3,726,092 - qor OKGIIK_16975 0.74 -1.6
3,726,092 - qor OKGIIK_16975 0.74 -2.7
3,726,094 + qor OKGIIK_16975 0.74 -0.4
3,726,094 + qor OKGIIK_16975 0.74 -1.1
3,726,094 + qor OKGIIK_16975 0.74 -0.1
3,726,094 + qor OKGIIK_16975 0.74 -0.4
3,726,094 + qor OKGIIK_16975 0.74 +0.1
3,726,094 + qor OKGIIK_16975 0.74 +0.6
3,726,094 + qor OKGIIK_16975 0.74 +0.2
3,726,094 + qor OKGIIK_16975 0.74 -2.9
3,726,095 - qor OKGIIK_16975 0.74 +0.5
3,726,095 - qor OKGIIK_16975 0.74 +1.0
3,726,095 - qor OKGIIK_16975 0.74 -0.2
3,726,095 - qor OKGIIK_16975 0.74 -1.1
3,726,095 - qor OKGIIK_16975 0.74 +0.1
3,726,095 - qor OKGIIK_16975 0.74 -1.8
3,726,095 - qor OKGIIK_16975 0.74 -1.4
3,726,095 - qor OKGIIK_16975 0.74 -0.5
3,726,095 - qor OKGIIK_16975 0.74 -0.2
3,726,095 - qor OKGIIK_16975 0.74 -0.9
3,726,095 - qor OKGIIK_16975 0.74 +1.1
3,726,095 - qor OKGIIK_16975 0.74 +0.1
3,726,163 + qor OKGIIK_16975 0.81 -0.4
3,726,164 - qor OKGIIK_16975 0.81 +0.2
3,726,331 + -0.9
3,726,332 - +0.3
3,726,332 - +0.8
3,726,332 - -1.5
3,726,447 - -0.6
3,726,536 + +0.8
3,726,536 + +0.6
3,726,536 + +0.9
3,726,536 + -0.5
3,726,537 - +0.2
3,726,537 - +0.1
3,726,537 - -0.1
3,726,537 - -0.3
3,726,537 - -1.4
3,726,537 - -0.9
3,726,537 - +0.4
3,726,537 - +0.1
3,727,251 - -1.1
3,727,324 + -0.0
3,727,324 + +0.1
3,727,324 + -1.1
3,727,324 + -0.1
3,727,324 + +0.6
3,727,325 - +0.3

Or see this region's nucleotide sequence