Experiment: R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt purD and OKGIIK_13755 are separated by 89 nucleotides OKGIIK_13755 and OKGIIK_13760 are separated by 135 nucleotides OKGIIK_13760 and topA are separated by 0 nucleotides
OKGIIK_13750: purD - phosphoribosylamine--glycine ligase, at 2,986,821 to 2,988,104
purD
OKGIIK_13755: OKGIIK_13755 - AMP-ligase, at 2,988,194 to 2,989,567
_13755
OKGIIK_13760: OKGIIK_13760 - Threonylcarbamoyl-AMP synthase, at 2,989,703 to 2,990,275
_13760
OKGIIK_13765: topA - DNA topoisomerase I, at 2,990,276 to 2,992,759
topA
Position (kb)
2988
2989
2990 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2987.407 kb on + strand, within purD at 2987.407 kb on + strand, within purD at 2987.515 kb on + strand, within purD at 2987.515 kb on + strand, within purD at 2987.515 kb on + strand, within purD at 2987.516 kb on - strand, within purD at 2987.516 kb on - strand, within purD at 2987.516 kb on - strand, within purD at 2987.516 kb on - strand, within purD at 2987.516 kb on - strand, within purD at 2987.704 kb on + strand, within purD at 2987.704 kb on + strand, within purD at 2987.705 kb on - strand, within purD at 2988.155 kb on + strand at 2988.155 kb on + strand at 2988.155 kb on + strand at 2988.155 kb on + strand at 2988.156 kb on - strand at 2988.156 kb on - strand at 2988.156 kb on - strand at 2988.156 kb on - strand at 2988.156 kb on - strand at 2988.639 kb on + strand, within OKGIIK_13755 at 2988.639 kb on + strand, within OKGIIK_13755 at 2988.639 kb on + strand, within OKGIIK_13755 at 2988.639 kb on + strand, within OKGIIK_13755 at 2988.639 kb on + strand, within OKGIIK_13755 at 2988.639 kb on + strand, within OKGIIK_13755 at 2988.639 kb on + strand, within OKGIIK_13755 at 2988.639 kb on + strand, within OKGIIK_13755 at 2988.639 kb on + strand, within OKGIIK_13755 at 2988.639 kb on + strand, within OKGIIK_13755 at 2988.639 kb on + strand, within OKGIIK_13755 at 2988.640 kb on - strand, within OKGIIK_13755 at 2988.640 kb on - strand, within OKGIIK_13755 at 2988.640 kb on - strand, within OKGIIK_13755 at 2988.640 kb on - strand, within OKGIIK_13755 at 2988.640 kb on - strand, within OKGIIK_13755 at 2988.640 kb on - strand, within OKGIIK_13755 at 2988.640 kb on - strand, within OKGIIK_13755 at 2988.932 kb on + strand, within OKGIIK_13755 at 2988.933 kb on - strand, within OKGIIK_13755 at 2988.933 kb on - strand, within OKGIIK_13755 at 2988.975 kb on + strand, within OKGIIK_13755 at 2988.975 kb on + strand, within OKGIIK_13755 at 2988.975 kb on + strand, within OKGIIK_13755 at 2988.975 kb on + strand, within OKGIIK_13755 at 2988.975 kb on + strand, within OKGIIK_13755 at 2988.975 kb on + strand, within OKGIIK_13755 at 2988.975 kb on + strand, within OKGIIK_13755 at 2988.975 kb on + strand, within OKGIIK_13755 at 2988.975 kb on + strand, within OKGIIK_13755 at 2988.975 kb on + strand, within OKGIIK_13755 at 2988.975 kb on + strand, within OKGIIK_13755 at 2988.975 kb on + strand, within OKGIIK_13755 at 2988.975 kb on + strand, within OKGIIK_13755 at 2988.975 kb on + strand, within OKGIIK_13755 at 2988.975 kb on + strand, within OKGIIK_13755 at 2988.975 kb on + strand, within OKGIIK_13755 at 2988.975 kb on + strand, within OKGIIK_13755 at 2988.975 kb on + strand, within OKGIIK_13755 at 2988.975 kb on + strand, within OKGIIK_13755 at 2988.975 kb on + strand, within OKGIIK_13755 at 2988.975 kb on + strand, within OKGIIK_13755 at 2988.975 kb on + strand, within OKGIIK_13755 at 2988.975 kb on + strand, within OKGIIK_13755 at 2988.975 kb on + strand, within OKGIIK_13755 at 2988.975 kb on + strand, within OKGIIK_13755 at 2988.975 kb on + strand, within OKGIIK_13755 at 2988.975 kb on + strand, within OKGIIK_13755 at 2988.975 kb on + strand, within OKGIIK_13755 at 2988.975 kb on + strand, within OKGIIK_13755 at 2988.975 kb on + strand, within OKGIIK_13755 at 2988.975 kb on + strand, within OKGIIK_13755 at 2988.975 kb on + strand, within OKGIIK_13755 at 2988.976 kb on - strand, within OKGIIK_13755 at 2988.976 kb on - strand, within OKGIIK_13755 at 2988.976 kb on - strand, within OKGIIK_13755 at 2988.976 kb on - strand, within OKGIIK_13755 at 2988.976 kb on - strand, within OKGIIK_13755 at 2988.976 kb on - strand, within OKGIIK_13755 at 2988.976 kb on - strand, within OKGIIK_13755 at 2988.976 kb on - strand, within OKGIIK_13755 at 2988.976 kb on - strand, within OKGIIK_13755 at 2988.976 kb on - strand, within OKGIIK_13755 at 2988.976 kb on - strand, within OKGIIK_13755 at 2988.976 kb on - strand, within OKGIIK_13755 at 2988.976 kb on - strand, within OKGIIK_13755 at 2988.976 kb on - strand, within OKGIIK_13755 at 2988.976 kb on - strand, within OKGIIK_13755 at 2988.976 kb on - strand, within OKGIIK_13755 at 2988.976 kb on - strand, within OKGIIK_13755 at 2988.976 kb on - strand, within OKGIIK_13755 at 2988.976 kb on - strand, within OKGIIK_13755 at 2988.976 kb on - strand, within OKGIIK_13755 at 2988.976 kb on - strand, within OKGIIK_13755 at 2988.976 kb on - strand, within OKGIIK_13755 at 2988.976 kb on - strand, within OKGIIK_13755 at 2988.976 kb on - strand, within OKGIIK_13755 at 2988.976 kb on - strand, within OKGIIK_13755 at 2988.976 kb on - strand, within OKGIIK_13755 at 2988.976 kb on - strand, within OKGIIK_13755 at 2988.976 kb on - strand, within OKGIIK_13755 at 2988.976 kb on - strand, within OKGIIK_13755 at 2988.976 kb on - strand, within OKGIIK_13755 at 2988.976 kb on - strand, within OKGIIK_13755 at 2988.976 kb on - strand, within OKGIIK_13755 at 2988.976 kb on - strand, within OKGIIK_13755 at 2988.976 kb on - strand, within OKGIIK_13755 at 2988.976 kb on - strand, within OKGIIK_13755 at 2988.976 kb on - strand, within OKGIIK_13755 at 2988.976 kb on - strand, within OKGIIK_13755 at 2988.976 kb on - strand, within OKGIIK_13755 at 2988.976 kb on - strand, within OKGIIK_13755 at 2989.102 kb on + strand, within OKGIIK_13755 at 2989.102 kb on + strand, within OKGIIK_13755 at 2989.122 kb on + strand, within OKGIIK_13755 at 2989.122 kb on + strand, within OKGIIK_13755 at 2989.122 kb on + strand, within OKGIIK_13755 at 2989.122 kb on + strand, within OKGIIK_13755 at 2989.122 kb on + strand, within OKGIIK_13755 at 2989.122 kb on + strand, within OKGIIK_13755 at 2989.122 kb on + strand, within OKGIIK_13755 at 2989.122 kb on + strand, within OKGIIK_13755 at 2989.122 kb on + strand, within OKGIIK_13755 at 2989.122 kb on + strand, within OKGIIK_13755 at 2989.122 kb on + strand, within OKGIIK_13755 at 2989.122 kb on + strand, within OKGIIK_13755 at 2989.122 kb on + strand, within OKGIIK_13755 at 2989.122 kb on + strand, within OKGIIK_13755 at 2989.123 kb on - strand, within OKGIIK_13755 at 2989.123 kb on - strand, within OKGIIK_13755 at 2989.123 kb on - strand, within OKGIIK_13755 at 2989.123 kb on - strand, within OKGIIK_13755 at 2989.123 kb on - strand, within OKGIIK_13755 at 2989.123 kb on - strand, within OKGIIK_13755 at 2989.123 kb on - strand, within OKGIIK_13755 at 2989.257 kb on + strand, within OKGIIK_13755 at 2989.257 kb on + strand, within OKGIIK_13755 at 2989.258 kb on - strand, within OKGIIK_13755 at 2989.258 kb on - strand, within OKGIIK_13755 at 2989.258 kb on - strand, within OKGIIK_13755 at 2989.258 kb on - strand, within OKGIIK_13755 at 2989.371 kb on + strand, within OKGIIK_13755 at 2989.371 kb on + strand, within OKGIIK_13755 at 2989.545 kb on + strand at 2989.545 kb on + strand at 2989.545 kb on + strand at 2989.545 kb on + strand at 2989.545 kb on + strand at 2989.545 kb on + strand at 2989.545 kb on + strand at 2989.545 kb on + strand at 2989.545 kb on + strand at 2989.545 kb on + strand at 2989.545 kb on + strand at 2989.545 kb on + strand at 2989.545 kb on + strand at 2989.545 kb on + strand at 2989.545 kb on + strand at 2989.546 kb on - strand at 2989.546 kb on - strand at 2989.546 kb on - strand at 2989.546 kb on - strand at 2989.546 kb on - strand at 2989.546 kb on - strand at 2989.546 kb on - strand at 2989.546 kb on - strand at 2989.546 kb on - strand at 2989.546 kb on - strand at 2989.546 kb on - strand at 2989.546 kb on - strand at 2989.546 kb on - strand at 2989.546 kb on - strand at 2989.546 kb on - strand at 2989.546 kb on - strand at 2989.546 kb on - strand at 2989.546 kb on - strand at 2989.546 kb on - strand at 2989.546 kb on - strand at 2989.546 kb on - strand at 2989.546 kb on - strand at 2989.546 kb on - strand at 2989.554 kb on + strand at 2989.555 kb on - strand at 2989.555 kb on - strand at 2989.618 kb on + strand at 2989.618 kb on + strand at 2989.618 kb on + strand at 2989.618 kb on + strand at 2989.618 kb on + strand at 2989.618 kb on + strand at 2989.618 kb on + strand at 2989.619 kb on - strand at 2989.619 kb on - strand at 2989.619 kb on - strand at 2989.619 kb on - strand at 2989.619 kb on - strand at 2989.619 kb on - strand at 2989.619 kb on - strand at 2989.657 kb on + strand at 2989.657 kb on + strand at 2989.657 kb on + strand at 2989.657 kb on + strand at 2989.657 kb on + strand at 2989.657 kb on + strand at 2989.658 kb on - strand at 2989.658 kb on - strand at 2989.658 kb on - strand at 2989.658 kb on - strand at 2989.658 kb on - strand at 2989.658 kb on - strand at 2989.658 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM remove 2,987,407 + purD OKGIIK_13750 0.46 -2.3 2,987,407 + purD OKGIIK_13750 0.46 -2.1 2,987,515 + purD OKGIIK_13750 0.54 -1.1 2,987,515 + purD OKGIIK_13750 0.54 -2.6 2,987,515 + purD OKGIIK_13750 0.54 -1.1 2,987,516 - purD OKGIIK_13750 0.54 +0.9 2,987,516 - purD OKGIIK_13750 0.54 -1.1 2,987,516 - purD OKGIIK_13750 0.54 -1.1 2,987,516 - purD OKGIIK_13750 0.54 -1.4 2,987,516 - purD OKGIIK_13750 0.54 -0.7 2,987,704 + purD OKGIIK_13750 0.69 -1.1 2,987,704 + purD OKGIIK_13750 0.69 -0.1 2,987,705 - purD OKGIIK_13750 0.69 -0.7 2,988,155 + +0.5 2,988,155 + -0.1 2,988,155 + +0.1 2,988,155 + -0.1 2,988,156 - -2.1 2,988,156 - -0.2 2,988,156 - -0.1 2,988,156 - -1.4 2,988,156 - -0.1 2,988,639 + OKGIIK_13755 0.32 -1.5 2,988,639 + OKGIIK_13755 0.32 -1.4 2,988,639 + OKGIIK_13755 0.32 -1.4 2,988,639 + OKGIIK_13755 0.32 +0.6 2,988,639 + OKGIIK_13755 0.32 -1.1 2,988,639 + OKGIIK_13755 0.32 -0.4 2,988,639 + OKGIIK_13755 0.32 -1.4 2,988,639 + OKGIIK_13755 0.32 +0.1 2,988,639 + OKGIIK_13755 0.32 +0.6 2,988,639 + OKGIIK_13755 0.32 -0.3 2,988,639 + OKGIIK_13755 0.32 -1.4 2,988,640 - OKGIIK_13755 0.32 -0.4 2,988,640 - OKGIIK_13755 0.32 -1.6 2,988,640 - OKGIIK_13755 0.32 +0.6 2,988,640 - OKGIIK_13755 0.32 -2.4 2,988,640 - OKGIIK_13755 0.32 -2.1 2,988,640 - OKGIIK_13755 0.32 -0.9 2,988,640 - OKGIIK_13755 0.32 -1.1 2,988,932 + OKGIIK_13755 0.54 -0.9 2,988,933 - OKGIIK_13755 0.54 -1.4 2,988,933 - OKGIIK_13755 0.54 +0.8 2,988,975 + OKGIIK_13755 0.57 -1.1 2,988,975 + OKGIIK_13755 0.57 -1.4 2,988,975 + OKGIIK_13755 0.57 -1.4 2,988,975 + OKGIIK_13755 0.57 -0.1 2,988,975 + OKGIIK_13755 0.57 -0.4 2,988,975 + OKGIIK_13755 0.57 +0.1 2,988,975 + OKGIIK_13755 0.57 -0.1 2,988,975 + OKGIIK_13755 0.57 -0.9 2,988,975 + OKGIIK_13755 0.57 -1.4 2,988,975 + OKGIIK_13755 0.57 -0.4 2,988,975 + OKGIIK_13755 0.57 -0.7 2,988,975 + OKGIIK_13755 0.57 -1.1 2,988,975 + OKGIIK_13755 0.57 +1.0 2,988,975 + OKGIIK_13755 0.57 +0.1 2,988,975 + OKGIIK_13755 0.57 +0.2 2,988,975 + OKGIIK_13755 0.57 -1.7 2,988,975 + OKGIIK_13755 0.57 -0.5 2,988,975 + OKGIIK_13755 0.57 -1.1 2,988,975 + OKGIIK_13755 0.57 -0.8 2,988,975 + OKGIIK_13755 0.57 +0.0 2,988,975 + OKGIIK_13755 0.57 -0.1 2,988,975 + OKGIIK_13755 0.57 -1.0 2,988,975 + OKGIIK_13755 0.57 -0.1 2,988,975 + OKGIIK_13755 0.57 -1.7 2,988,975 + OKGIIK_13755 0.57 -1.3 2,988,975 + OKGIIK_13755 0.57 -0.4 2,988,975 + OKGIIK_13755 0.57 +1.0 2,988,975 + OKGIIK_13755 0.57 -1.1 2,988,975 + OKGIIK_13755 0.57 -0.9 2,988,975 + OKGIIK_13755 0.57 -0.8 2,988,975 + OKGIIK_13755 0.57 +0.7 2,988,975 + OKGIIK_13755 0.57 -1.3 2,988,976 - OKGIIK_13755 0.57 -0.4 2,988,976 - OKGIIK_13755 0.57 -0.5 2,988,976 - OKGIIK_13755 0.57 -0.7 2,988,976 - OKGIIK_13755 0.57 -0.1 2,988,976 - OKGIIK_13755 0.57 -0.1 2,988,976 - OKGIIK_13755 0.57 -1.4 2,988,976 - OKGIIK_13755 0.57 -1.4 2,988,976 - OKGIIK_13755 0.57 -0.9 2,988,976 - OKGIIK_13755 0.57 -0.3 2,988,976 - OKGIIK_13755 0.57 +0.1 2,988,976 - OKGIIK_13755 0.57 -0.3 2,988,976 - OKGIIK_13755 0.57 -1.9 2,988,976 - OKGIIK_13755 0.57 +0.7 2,988,976 - OKGIIK_13755 0.57 -0.7 2,988,976 - OKGIIK_13755 0.57 +0.0 2,988,976 - OKGIIK_13755 0.57 -2.3 2,988,976 - OKGIIK_13755 0.57 -1.4 2,988,976 - OKGIIK_13755 0.57 -0.3 2,988,976 - OKGIIK_13755 0.57 -1.4 2,988,976 - OKGIIK_13755 0.57 -1.1 2,988,976 - OKGIIK_13755 0.57 -1.2 2,988,976 - OKGIIK_13755 0.57 -1.1 2,988,976 - OKGIIK_13755 0.57 -1.4 2,988,976 - OKGIIK_13755 0.57 -1.1 2,988,976 - OKGIIK_13755 0.57 -0.3 2,988,976 - OKGIIK_13755 0.57 -1.9 2,988,976 - OKGIIK_13755 0.57 -1.0 2,988,976 - OKGIIK_13755 0.57 -1.4 2,988,976 - OKGIIK_13755 0.57 +0.0 2,988,976 - OKGIIK_13755 0.57 +0.9 2,988,976 - OKGIIK_13755 0.57 +0.5 2,988,976 - OKGIIK_13755 0.57 -1.1 2,988,976 - OKGIIK_13755 0.57 -0.1 2,988,976 - OKGIIK_13755 0.57 +1.2 2,988,976 - OKGIIK_13755 0.57 -1.4 2,988,976 - OKGIIK_13755 0.57 -1.6 2,988,976 - OKGIIK_13755 0.57 +1.7 2,988,976 - OKGIIK_13755 0.57 -0.7 2,988,976 - OKGIIK_13755 0.57 -1.4 2,989,102 + OKGIIK_13755 0.66 -1.1 2,989,102 + OKGIIK_13755 0.66 -0.1 2,989,122 + OKGIIK_13755 0.68 -1.1 2,989,122 + OKGIIK_13755 0.68 -1.2 2,989,122 + OKGIIK_13755 0.68 +0.8 2,989,122 + OKGIIK_13755 0.68 -1.4 2,989,122 + OKGIIK_13755 0.68 -0.7 2,989,122 + OKGIIK_13755 0.68 +0.9 2,989,122 + OKGIIK_13755 0.68 -1.1 2,989,122 + OKGIIK_13755 0.68 -1.8 2,989,122 + OKGIIK_13755 0.68 +0.1 2,989,122 + OKGIIK_13755 0.68 -1.1 2,989,122 + OKGIIK_13755 0.68 -0.3 2,989,122 + OKGIIK_13755 0.68 -2.1 2,989,122 + OKGIIK_13755 0.68 -1.2 2,989,122 + OKGIIK_13755 0.68 -0.8 2,989,123 - OKGIIK_13755 0.68 -3.1 2,989,123 - OKGIIK_13755 0.68 +0.6 2,989,123 - OKGIIK_13755 0.68 -0.5 2,989,123 - OKGIIK_13755 0.68 -0.3 2,989,123 - OKGIIK_13755 0.68 +0.5 2,989,123 - OKGIIK_13755 0.68 -1.7 2,989,123 - OKGIIK_13755 0.68 -0.5 2,989,257 + OKGIIK_13755 0.77 +0.5 2,989,257 + OKGIIK_13755 0.77 -1.4 2,989,258 - OKGIIK_13755 0.77 -1.1 2,989,258 - OKGIIK_13755 0.77 -0.1 2,989,258 - OKGIIK_13755 0.77 -1.1 2,989,258 - OKGIIK_13755 0.77 -1.1 2,989,371 + OKGIIK_13755 0.86 +0.1 2,989,371 + OKGIIK_13755 0.86 +1.1 2,989,545 + -1.2 2,989,545 + -0.2 2,989,545 + -1.1 2,989,545 + -1.1 2,989,545 + -2.8 2,989,545 + -1.5 2,989,545 + -1.7 2,989,545 + -0.4 2,989,545 + -1.4 2,989,545 + -0.4 2,989,545 + +0.2 2,989,545 + -1.9 2,989,545 + -0.1 2,989,545 + +0.9 2,989,545 + -1.1 2,989,546 - -2.1 2,989,546 - -1.0 2,989,546 - -1.6 2,989,546 - -0.5 2,989,546 - -0.6 2,989,546 - -0.7 2,989,546 - -0.9 2,989,546 - -1.4 2,989,546 - -1.1 2,989,546 - +0.5 2,989,546 - -1.7 2,989,546 - -1.7 2,989,546 - -1.3 2,989,546 - +0.9 2,989,546 - -2.1 2,989,546 - +0.4 2,989,546 - -0.3 2,989,546 - -1.7 2,989,546 - -2.4 2,989,546 - +0.3 2,989,546 - -1.3 2,989,546 - -0.5 2,989,546 - -1.1 2,989,554 + -2.6 2,989,555 - -0.4 2,989,555 - -0.7 2,989,618 + -1.2 2,989,618 + -0.9 2,989,618 + +0.9 2,989,618 + +0.9 2,989,618 + -0.7 2,989,618 + -1.7 2,989,618 + -1.1 2,989,619 - +1.1 2,989,619 - +1.7 2,989,619 - -1.0 2,989,619 - -1.3 2,989,619 - +0.7 2,989,619 - -0.4 2,989,619 - -0.1 2,989,657 + -1.1 2,989,657 + -2.6 2,989,657 + -1.1 2,989,657 + -1.0 2,989,657 + -0.4 2,989,657 + -0.9 2,989,658 - -1.7 2,989,658 - -0.1 2,989,658 - -1.1 2,989,658 - +0.1 2,989,658 - -0.8 2,989,658 - -2.1 2,989,658 - -1.9
Or see this region's nucleotide sequence