Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_08955

Experiment: R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOKGIIK_08945 and OKGIIK_08950 are separated by 90 nucleotidesOKGIIK_08950 and OKGIIK_08955 are separated by 316 nucleotidesOKGIIK_08955 and OKGIIK_08960 are separated by 20 nucleotides OKGIIK_08945: OKGIIK_08945 - Integrase, at 1,921,172 to 1,922,200 _08945 OKGIIK_08950: OKGIIK_08950 - tRNA-Xxx, at 1,922,291 to 1,922,376 _08950 OKGIIK_08955: OKGIIK_08955 - Type I restriction enzyme endonuclease subunit, at 1,922,693 to 1,926,112 _08955 OKGIIK_08960: OKGIIK_08960 - Restriction endonuclease subunit S, at 1,926,133 to 1,927,041 _08960 Position (kb) 1922 1923 1924 1925 1926 1927Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1921.760 kb on + strand, within OKGIIK_08945at 1921.760 kb on + strand, within OKGIIK_08945at 1921.760 kb on + strand, within OKGIIK_08945at 1921.761 kb on - strand, within OKGIIK_08945at 1921.761 kb on - strand, within OKGIIK_08945at 1921.786 kb on + strand, within OKGIIK_08945at 1921.925 kb on + strand, within OKGIIK_08945at 1921.925 kb on + strand, within OKGIIK_08945at 1921.926 kb on - strand, within OKGIIK_08945at 1921.926 kb on - strand, within OKGIIK_08945at 1921.979 kb on + strand, within OKGIIK_08945at 1921.979 kb on + strand, within OKGIIK_08945at 1921.979 kb on + strand, within OKGIIK_08945at 1921.979 kb on + strand, within OKGIIK_08945at 1921.979 kb on + strand, within OKGIIK_08945at 1921.980 kb on - strand, within OKGIIK_08945at 1921.980 kb on - strand, within OKGIIK_08945at 1921.980 kb on - strand, within OKGIIK_08945at 1921.980 kb on - strand, within OKGIIK_08945at 1921.980 kb on - strand, within OKGIIK_08945at 1921.980 kb on - strand, within OKGIIK_08945at 1921.980 kb on - strand, within OKGIIK_08945at 1921.980 kb on - strand, within OKGIIK_08945at 1921.980 kb on - strand, within OKGIIK_08945at 1921.980 kb on - strand, within OKGIIK_08945at 1921.980 kb on - strand, within OKGIIK_08945at 1921.980 kb on - strand, within OKGIIK_08945at 1921.980 kb on - strand, within OKGIIK_08945at 1921.980 kb on - strand, within OKGIIK_08945at 1921.990 kb on - strand, within OKGIIK_08945at 1922.156 kb on + strandat 1922.156 kb on + strandat 1922.156 kb on + strandat 1922.157 kb on - strandat 1922.157 kb on - strandat 1922.157 kb on - strandat 1922.157 kb on - strandat 1922.157 kb on - strandat 1922.228 kb on + strandat 1922.228 kb on + strandat 1922.229 kb on - strandat 1922.288 kb on + strandat 1922.289 kb on - strandat 1922.372 kb on + strandat 1922.663 kb on - strandat 1922.694 kb on + strandat 1922.695 kb on - strandat 1922.748 kb on + strandat 1922.748 kb on + strandat 1922.748 kb on + strandat 1922.748 kb on + strandat 1922.749 kb on - strandat 1922.749 kb on - strandat 1922.749 kb on - strandat 1922.749 kb on - strandat 1922.749 kb on - strandat 1922.749 kb on - strandat 1922.749 kb on - strandat 1922.749 kb on - strandat 1923.108 kb on + strand, within OKGIIK_08955at 1923.109 kb on - strand, within OKGIIK_08955at 1923.142 kb on - strand, within OKGIIK_08955at 1923.288 kb on + strand, within OKGIIK_08955at 1923.289 kb on - strand, within OKGIIK_08955at 1923.289 kb on - strand, within OKGIIK_08955at 1923.414 kb on + strand, within OKGIIK_08955at 1923.414 kb on + strand, within OKGIIK_08955at 1923.414 kb on + strand, within OKGIIK_08955at 1923.415 kb on - strand, within OKGIIK_08955at 1923.447 kb on + strand, within OKGIIK_08955at 1923.447 kb on + strand, within OKGIIK_08955at 1923.447 kb on + strand, within OKGIIK_08955at 1923.447 kb on + strand, within OKGIIK_08955at 1923.447 kb on + strand, within OKGIIK_08955at 1923.675 kb on - strand, within OKGIIK_08955at 1923.675 kb on - strand, within OKGIIK_08955at 1923.675 kb on - strand, within OKGIIK_08955at 1923.675 kb on - strand, within OKGIIK_08955at 1923.675 kb on - strand, within OKGIIK_08955at 1923.736 kb on - strand, within OKGIIK_08955at 1923.777 kb on + strand, within OKGIIK_08955at 1923.777 kb on + strand, within OKGIIK_08955at 1923.777 kb on + strand, within OKGIIK_08955at 1923.777 kb on + strand, within OKGIIK_08955at 1923.778 kb on - strand, within OKGIIK_08955at 1923.778 kb on - strand, within OKGIIK_08955at 1924.266 kb on + strand, within OKGIIK_08955at 1924.266 kb on + strand, within OKGIIK_08955at 1924.266 kb on + strand, within OKGIIK_08955at 1924.267 kb on - strand, within OKGIIK_08955at 1924.267 kb on - strand, within OKGIIK_08955at 1924.267 kb on - strand, within OKGIIK_08955at 1924.267 kb on - strand, within OKGIIK_08955at 1924.396 kb on - strand, within OKGIIK_08955at 1924.584 kb on + strand, within OKGIIK_08955at 1924.584 kb on + strand, within OKGIIK_08955at 1924.585 kb on - strand, within OKGIIK_08955at 1924.752 kb on + strand, within OKGIIK_08955at 1924.752 kb on + strand, within OKGIIK_08955at 1924.752 kb on + strand, within OKGIIK_08955at 1924.752 kb on + strand, within OKGIIK_08955at 1924.807 kb on - strand, within OKGIIK_08955at 1924.807 kb on - strand, within OKGIIK_08955at 1924.807 kb on - strand, within OKGIIK_08955at 1924.902 kb on + strand, within OKGIIK_08955at 1925.002 kb on - strand, within OKGIIK_08955at 1925.097 kb on + strand, within OKGIIK_08955at 1925.097 kb on + strand, within OKGIIK_08955at 1925.097 kb on + strand, within OKGIIK_08955at 1925.097 kb on + strand, within OKGIIK_08955at 1925.097 kb on + strand, within OKGIIK_08955at 1925.097 kb on + strand, within OKGIIK_08955at 1925.097 kb on + strand, within OKGIIK_08955at 1925.098 kb on - strand, within OKGIIK_08955at 1925.098 kb on - strand, within OKGIIK_08955at 1925.098 kb on - strand, within OKGIIK_08955at 1925.098 kb on - strand, within OKGIIK_08955at 1925.098 kb on - strand, within OKGIIK_08955at 1925.098 kb on - strand, within OKGIIK_08955at 1925.127 kb on + strand, within OKGIIK_08955at 1925.127 kb on + strand, within OKGIIK_08955at 1925.127 kb on + strand, within OKGIIK_08955at 1925.127 kb on + strand, within OKGIIK_08955at 1925.127 kb on + strand, within OKGIIK_08955at 1925.127 kb on + strand, within OKGIIK_08955at 1925.128 kb on - strand, within OKGIIK_08955at 1925.128 kb on - strand, within OKGIIK_08955at 1925.128 kb on - strand, within OKGIIK_08955at 1925.128 kb on - strand, within OKGIIK_08955at 1925.128 kb on - strand, within OKGIIK_08955at 1925.439 kb on + strand, within OKGIIK_08955at 1925.440 kb on - strand, within OKGIIK_08955at 1925.440 kb on - strand, within OKGIIK_08955at 1925.550 kb on + strand, within OKGIIK_08955at 1925.551 kb on - strand, within OKGIIK_08955at 1925.551 kb on - strand, within OKGIIK_08955at 1925.551 kb on - strand, within OKGIIK_08955at 1925.551 kb on - strand, within OKGIIK_08955at 1925.593 kb on - strand, within OKGIIK_08955at 1925.664 kb on + strand, within OKGIIK_08955at 1925.665 kb on - strand, within OKGIIK_08955at 1925.665 kb on - strand, within OKGIIK_08955at 1925.665 kb on - strand, within OKGIIK_08955at 1925.665 kb on - strand, within OKGIIK_08955at 1925.665 kb on - strand, within OKGIIK_08955at 1925.823 kb on + strandat 1925.823 kb on + strandat 1926.024 kb on + strandat 1926.025 kb on - strandat 1926.025 kb on - strandat 1926.025 kb on - strandat 1926.136 kb on + strandat 1926.136 kb on + strandat 1926.136 kb on + strandat 1926.137 kb on - strandat 1926.137 kb on - strandat 1926.137 kb on - strandat 1926.138 kb on - strandat 1926.215 kb on - strandat 1926.215 kb on - strandat 1926.229 kb on + strand, within OKGIIK_08960at 1926.257 kb on - strand, within OKGIIK_08960at 1926.353 kb on + strand, within OKGIIK_08960at 1926.362 kb on - strand, within OKGIIK_08960at 1926.362 kb on - strand, within OKGIIK_08960at 1926.362 kb on - strand, within OKGIIK_08960at 1926.362 kb on - strand, within OKGIIK_08960at 1926.362 kb on - strand, within OKGIIK_08960at 1926.398 kb on + strand, within OKGIIK_08960at 1926.398 kb on + strand, within OKGIIK_08960at 1926.399 kb on - strand, within OKGIIK_08960at 1926.399 kb on - strand, within OKGIIK_08960at 1926.404 kb on + strand, within OKGIIK_08960at 1926.404 kb on + strand, within OKGIIK_08960at 1926.405 kb on - strand, within OKGIIK_08960at 1926.405 kb on - strand, within OKGIIK_08960at 1926.499 kb on + strand, within OKGIIK_08960at 1926.499 kb on + strand, within OKGIIK_08960at 1926.499 kb on + strand, within OKGIIK_08960at 1926.500 kb on - strand, within OKGIIK_08960at 1926.500 kb on - strand, within OKGIIK_08960at 1926.561 kb on - strand, within OKGIIK_08960at 1926.561 kb on - strand, within OKGIIK_08960at 1926.736 kb on - strand, within OKGIIK_08960at 1926.736 kb on - strand, within OKGIIK_08960at 1926.736 kb on - strand, within OKGIIK_08960at 1926.984 kb on + strandat 1926.984 kb on + strandat 1926.984 kb on + strandat 1926.984 kb on + strandat 1926.985 kb on - strandat 1926.985 kb on - strandat 1926.985 kb on - strandat 1927.055 kb on + strandat 1927.055 kb on + strandat 1927.055 kb on + strandat 1927.055 kb on + strandat 1927.055 kb on + strandat 1927.056 kb on - strandat 1927.056 kb on - strandat 1927.056 kb on - strandat 1927.056 kb on - strandat 1927.056 kb on - strandat 1927.058 kb on + strandat 1927.058 kb on + strandat 1927.059 kb on - strandat 1927.059 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
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1,921,760 + OKGIIK_08945 0.57 +0.3
1,921,760 + OKGIIK_08945 0.57 -0.0
1,921,760 + OKGIIK_08945 0.57 -1.0
1,921,761 - OKGIIK_08945 0.57 -0.7
1,921,761 - OKGIIK_08945 0.57 -1.0
1,921,786 + OKGIIK_08945 0.60 +0.5
1,921,925 + OKGIIK_08945 0.73 +0.4
1,921,925 + OKGIIK_08945 0.73 +1.1
1,921,926 - OKGIIK_08945 0.73 -0.2
1,921,926 - OKGIIK_08945 0.73 -0.8
1,921,979 + OKGIIK_08945 0.78 -1.7
1,921,979 + OKGIIK_08945 0.78 +0.1
1,921,979 + OKGIIK_08945 0.78 -0.7
1,921,979 + OKGIIK_08945 0.78 -0.7
1,921,979 + OKGIIK_08945 0.78 +0.6
1,921,980 - OKGIIK_08945 0.79 -0.7
1,921,980 - OKGIIK_08945 0.79 +0.1
1,921,980 - OKGIIK_08945 0.79 -0.7
1,921,980 - OKGIIK_08945 0.79 +1.6
1,921,980 - OKGIIK_08945 0.79 -1.3
1,921,980 - OKGIIK_08945 0.79 +0.8
1,921,980 - OKGIIK_08945 0.79 -1.3
1,921,980 - OKGIIK_08945 0.79 +1.2
1,921,980 - OKGIIK_08945 0.79 -1.7
1,921,980 - OKGIIK_08945 0.79 -1.3
1,921,980 - OKGIIK_08945 0.79 -1.9
1,921,980 - OKGIIK_08945 0.79 -0.2
1,921,980 - OKGIIK_08945 0.79 -0.2
1,921,980 - OKGIIK_08945 0.79 +0.3
1,921,990 - OKGIIK_08945 0.79 -1.3
1,922,156 + -0.3
1,922,156 + -1.4
1,922,156 + +0.8
1,922,157 - -0.7
1,922,157 - +0.8
1,922,157 - +0.6
1,922,157 - -1.6
1,922,157 - +1.2
1,922,228 + -0.7
1,922,228 + -0.9
1,922,229 - +0.5
1,922,288 + +0.7
1,922,289 - +0.8
1,922,372 + +0.1
1,922,663 - +0.7
1,922,694 + +0.5
1,922,695 - -1.3
1,922,748 + +0.7
1,922,748 + +0.4
1,922,748 + +0.4
1,922,748 + -0.2
1,922,749 - +0.4
1,922,749 - -0.4
1,922,749 - -0.9
1,922,749 - -0.8
1,922,749 - +0.3
1,922,749 - -1.6
1,922,749 - +0.2
1,922,749 - -2.2
1,923,108 + OKGIIK_08955 0.12 -0.3
1,923,109 - OKGIIK_08955 0.12 -2.0
1,923,142 - OKGIIK_08955 0.13 +0.8
1,923,288 + OKGIIK_08955 0.17 -0.2
1,923,289 - OKGIIK_08955 0.17 +1.5
1,923,289 - OKGIIK_08955 0.17 +1.6
1,923,414 + OKGIIK_08955 0.21 +0.9
1,923,414 + OKGIIK_08955 0.21 -1.0
1,923,414 + OKGIIK_08955 0.21 -1.3
1,923,415 - OKGIIK_08955 0.21 +0.4
1,923,447 + OKGIIK_08955 0.22 -2.2
1,923,447 + OKGIIK_08955 0.22 -0.6
1,923,447 + OKGIIK_08955 0.22 -0.4
1,923,447 + OKGIIK_08955 0.22 -1.5
1,923,447 + OKGIIK_08955 0.22 +0.0
1,923,675 - OKGIIK_08955 0.29 +0.3
1,923,675 - OKGIIK_08955 0.29 -0.0
1,923,675 - OKGIIK_08955 0.29 +0.0
1,923,675 - OKGIIK_08955 0.29 -1.2
1,923,675 - OKGIIK_08955 0.29 +0.3
1,923,736 - OKGIIK_08955 0.30 +1.3
1,923,777 + OKGIIK_08955 0.32 +0.9
1,923,777 + OKGIIK_08955 0.32 +0.1
1,923,777 + OKGIIK_08955 0.32 +0.2
1,923,777 + OKGIIK_08955 0.32 -0.7
1,923,778 - OKGIIK_08955 0.32 -0.3
1,923,778 - OKGIIK_08955 0.32 -1.0
1,924,266 + OKGIIK_08955 0.46 +0.5
1,924,266 + OKGIIK_08955 0.46 +0.9
1,924,266 + OKGIIK_08955 0.46 +0.7
1,924,267 - OKGIIK_08955 0.46 +1.0
1,924,267 - OKGIIK_08955 0.46 -0.0
1,924,267 - OKGIIK_08955 0.46 -0.0
1,924,267 - OKGIIK_08955 0.46 -1.0
1,924,396 - OKGIIK_08955 0.50 +0.3
1,924,584 + OKGIIK_08955 0.55 -3.1
1,924,584 + OKGIIK_08955 0.55 -0.4
1,924,585 - OKGIIK_08955 0.55 +0.8
1,924,752 + OKGIIK_08955 0.60 -1.3
1,924,752 + OKGIIK_08955 0.60 -2.3
1,924,752 + OKGIIK_08955 0.60 +1.4
1,924,752 + OKGIIK_08955 0.60 -0.6
1,924,807 - OKGIIK_08955 0.62 +0.2
1,924,807 - OKGIIK_08955 0.62 -1.0
1,924,807 - OKGIIK_08955 0.62 +0.5
1,924,902 + OKGIIK_08955 0.65 -0.3
1,925,002 - OKGIIK_08955 0.68 +1.2
1,925,097 + OKGIIK_08955 0.70 +0.3
1,925,097 + OKGIIK_08955 0.70 +0.8
1,925,097 + OKGIIK_08955 0.70 -0.0
1,925,097 + OKGIIK_08955 0.70 +1.4
1,925,097 + OKGIIK_08955 0.70 -0.1
1,925,097 + OKGIIK_08955 0.70 +1.0
1,925,097 + OKGIIK_08955 0.70 +0.6
1,925,098 - OKGIIK_08955 0.70 +0.3
1,925,098 - OKGIIK_08955 0.70 +0.2
1,925,098 - OKGIIK_08955 0.70 +0.3
1,925,098 - OKGIIK_08955 0.70 +2.1
1,925,098 - OKGIIK_08955 0.70 +0.0
1,925,098 - OKGIIK_08955 0.70 +0.2
1,925,127 + OKGIIK_08955 0.71 +0.1
1,925,127 + OKGIIK_08955 0.71 +1.4
1,925,127 + OKGIIK_08955 0.71 +1.4
1,925,127 + OKGIIK_08955 0.71 +0.3
1,925,127 + OKGIIK_08955 0.71 -1.4
1,925,127 + OKGIIK_08955 0.71 +0.3
1,925,128 - OKGIIK_08955 0.71 +0.1
1,925,128 - OKGIIK_08955 0.71 -0.7
1,925,128 - OKGIIK_08955 0.71 -0.9
1,925,128 - OKGIIK_08955 0.71 -1.0
1,925,128 - OKGIIK_08955 0.71 -0.9
1,925,439 + OKGIIK_08955 0.80 -0.2
1,925,440 - OKGIIK_08955 0.80 +0.6
1,925,440 - OKGIIK_08955 0.80 +0.6
1,925,550 + OKGIIK_08955 0.84 -0.3
1,925,551 - OKGIIK_08955 0.84 -1.3
1,925,551 - OKGIIK_08955 0.84 +0.9
1,925,551 - OKGIIK_08955 0.84 -0.6
1,925,551 - OKGIIK_08955 0.84 +1.1
1,925,593 - OKGIIK_08955 0.85 +0.3
1,925,664 + OKGIIK_08955 0.87 +0.1
1,925,665 - OKGIIK_08955 0.87 +0.1
1,925,665 - OKGIIK_08955 0.87 -1.3
1,925,665 - OKGIIK_08955 0.87 -1.8
1,925,665 - OKGIIK_08955 0.87 -2.7
1,925,665 - OKGIIK_08955 0.87 +0.4
1,925,823 + -0.8
1,925,823 + +0.5
1,926,024 + +2.3
1,926,025 - -1.1
1,926,025 - -1.5
1,926,025 - -0.7
1,926,136 + -0.1
1,926,136 + +0.7
1,926,136 + +1.3
1,926,137 - -0.1
1,926,137 - -1.9
1,926,137 - +1.4
1,926,138 - +1.2
1,926,215 - +1.2
1,926,215 - +0.4
1,926,229 + OKGIIK_08960 0.11 +0.1
1,926,257 - OKGIIK_08960 0.14 +1.9
1,926,353 + OKGIIK_08960 0.24 +0.5
1,926,362 - OKGIIK_08960 0.25 +0.5
1,926,362 - OKGIIK_08960 0.25 +0.5
1,926,362 - OKGIIK_08960 0.25 +0.1
1,926,362 - OKGIIK_08960 0.25 +1.3
1,926,362 - OKGIIK_08960 0.25 -1.0
1,926,398 + OKGIIK_08960 0.29 +0.4
1,926,398 + OKGIIK_08960 0.29 -0.9
1,926,399 - OKGIIK_08960 0.29 +0.3
1,926,399 - OKGIIK_08960 0.29 +1.0
1,926,404 + OKGIIK_08960 0.30 +1.0
1,926,404 + OKGIIK_08960 0.30 +0.2
1,926,405 - OKGIIK_08960 0.30 -0.1
1,926,405 - OKGIIK_08960 0.30 +0.1
1,926,499 + OKGIIK_08960 0.40 +0.3
1,926,499 + OKGIIK_08960 0.40 -0.3
1,926,499 + OKGIIK_08960 0.40 -0.1
1,926,500 - OKGIIK_08960 0.40 -1.0
1,926,500 - OKGIIK_08960 0.40 -1.0
1,926,561 - OKGIIK_08960 0.47 -2.3
1,926,561 - OKGIIK_08960 0.47 +0.5
1,926,736 - OKGIIK_08960 0.66 +0.5
1,926,736 - OKGIIK_08960 0.66 +1.4
1,926,736 - OKGIIK_08960 0.66 -1.5
1,926,984 + -1.4
1,926,984 + +0.4
1,926,984 + +0.7
1,926,984 + -0.3
1,926,985 - -1.0
1,926,985 - +1.3
1,926,985 - -0.9
1,927,055 + -1.3
1,927,055 + -0.1
1,927,055 + -1.5
1,927,055 + +2.4
1,927,055 + +0.6
1,927,056 - +0.4
1,927,056 - -2.2
1,927,056 - -0.2
1,927,056 - -1.3
1,927,056 - +0.2
1,927,058 + -1.5
1,927,058 + -0.4
1,927,059 - -1.3
1,927,059 - -1.6

Or see this region's nucleotide sequence